Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120919g00013 ATGGGACTCTTATCACTTACACTCAATCCTTCTCCCACTTTCAATCCTTCTCTTTTCACGCTACCTACTCACCGCTGCCGCCGCCTTCCTTCACTCGCCGTCAGAGCCACTTCCGTCAGCGGCGCCCCGCAGCCTCTGCTCCAAGTCAATGACCTCAAGGCCAAGATCCTCGAATCCGGCGTCGAGATTCTCCACGGCGTCAACCTCACGGTCAACGAGGGAGAGGTTCACGCCATCATGGGAAAGAACGGTTCCGGGAAAAGCACTTTTGCTAAGGTTCTTGTGGGTCACCCAGATTATGAGGTTACTGGAGGTAGTGTTGTGTTCAAAGGGGAGAATTTGCTTGAAATGGAACCTGAGGAGCGGTCACTAGCTGGTCTTTTTATGAGTTTCCAGTCTCCTGTTGAGATTCCTGGTGTTTCTAATGATGAGTTTTTGGTCATGGCCTATAATGCTCGGAGAAGAAAGCTTGGCCTCCCTGAGCTTGGACCACTTGAGTGCTTCTCTTACCTGATGGAGAAACTCCAGCTTGTTAACATGAAGCCGGACTTCCTCAATAGGAATGTCAATGAAGGATTTAGTGGTGGTGAACGCAAACGCAATGAAATTTTGCAGCTTGCGGTTTTGGGTGCAGACTTGGCTATTCTGGACGAAATTGATTCTGGATTGGATGTTGATGCACTCAGAGATGTTGCAAGTGCAGTCAATCGTATACTGACCCCAAAGAATTCTTTGTTGATGATAACTCACTACCGAAGAATACTGGATCTTTTAAATCCCACACATGTCCATGTTATGGACAAAGGGAAAATTGCAAGGACAGGCGACATATCCATTGTAGAAACTATTGAGACTGAGGGATATGAAACAGTTGCAGCTTTGACTTAA 888 0.4718 MGLLSLTLNPSPTFNPSLFTLPTHRCRRLPSLAVRATSVSGAPQPLLQVNDLKAKILESGVEILHGVNLTVNEGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVSNDEFLVMAYNARRRKLGLPELGPLECFSYLMEKLQLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVASAVNRILTPKNSLLMITHYRRILDLLNPTHVHVMDKGKIARTGDISIVETIETEGYETVAALT 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120919g00013 295 Gene3D - 46 294 IPR027417 -
Stsc120919g00013 295 Pfam ABC transporter 64 218 IPR003439 GO:0005524
Stsc120919g00013 295 NCBIfam Fe-S cluster assembly ATPase SufC 47 290 IPR010230 GO:0005524
Stsc120919g00013 295 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 42 292 IPR010230 GO:0005524
Stsc120919g00013 295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 277 IPR027417 -
Stsc120919g00013 295 CDD ABC_FeS_Assembly 47 288 IPR010230 GO:0005524
Stsc120919g00013 295 SMART AAA_5 73 270 IPR003593 GO:0016887
Stsc120919g00013 295 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 47 293 IPR003439 GO:0005524
Stsc120919g00013 295 ProSitePatterns ABC transporters family signature. 193 207 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120919g00013 Stsc-Chr120919 42173 45030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120919g00013 61 278 Calmodulin-binding Proteins AT2G36910 23.810 1.86e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120919g00013 K09013 - gmx:100798005 456.447