Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120915g00014 ATGGGTAGTGGTCATTACACTGCACATATCAAGGTTTTTTCCAATGTGCAGCTCTTAGATGAAAACAGGTGGTACAATTTTGACGACAGCCAAATATCGCCCATAAGTGAGGACGATGTGAACACTGCAGCTGCCTATGTTCTATTTTATCGGAGGGTGAAGAACGACGATGCTTCTGCTAGCAATGGGGCCAAGTCATCCATGCTGTCGGCAACATATACACACCCCTCAAACCTTATCATCACTTGTTCAATTCATTCTCTTGAGACATTCAAATCCATGGAACTCTTCTCTACCCAAACCCTTCTTCTCTTCCTATCTTTTCTCACCTTTCTCTACCTCCACCACCGAAAACCCAAAACTACACCCACGGGCTTCAAAGCCTACCCTATCGTGGGCACACTTCCTGACTTCCTCCTCAACCGCCATCGCTTCCTCGACTGGAGCACCGATGTCCTCCGCAACTGCCCCACCCACTCCGCCGTCTTCAAACGCCCCGGTAAGGTCCACGGCATCATGACAGCCAACCCGGACAACGTCGAACACGTACTCAAAACCAATTTCCATAACTACCCCAAGGGTGAACGCTTCATCTACCTCCTCCGAGACTTCCTTGGCCAAGGAATCTTCAACTCCGACGGCGATCTCTGGAAACTCCAACGCAAAACCGCTAGCTACGAGTTCAACACTAAATCGCTCCGAAATTTTGCCATCCAAAACGTCACCGTGGAGATCCAAACGAGGCTCATTCCGTTGCTCCAAAGAGCTTCCGAATCTGAATCCGTCCTCGACTTGCAAGACGTTCTTGAGCGCTTCGCCTTTGACAACATTTGCAAGCTAGCCTTCAACGTCGACCCGGCGTGCCTCGCCGCCGAGGGCTCCGGCGATGCCACAGTCGGCGGCGTATTCATGCGCGCGATCGAGGACGCGGCTGCACTCAGCTCCGGGAGGTTTATGAGCGTGTTTGAGTGGGTATGGAGGCTCAAGAAGTTCCTCAACGTTGGAAGCGAAAAGAGGCTTAGGGAATCGATCTCCATCGTACACGCGTTCGCTGATAAGATCATACGGTCAAGAATGGAAACAAAGGATGACACTACTGATGACATGGACCTCTTATCGCGGTTCATGGCCACAGAGGATAACTCCCCTGAGTTTCTGCGTGATATTGTTATAAGCTTCATTTTGGCGGGACGTGATACGACGTCGTCTGGGCTAAGTTGGTTCTTTTGGATTCTCTCTTCAAGACCTGACGTCAAGGATAAAATAGTCAAAGAAATTGAAACCGTTCGCGCCTGGAGCGAAAAGAGTGATTCTGAGGAGGCAGGAGGGTTTGGGTACGAAGAGTTGAAGGAGTTAAAATACTTACACGCGGCGATTTCAGAACCAATGAGGTTGTATCCTCCGGTGCCTGTAGACTCTATGGTGTGCTTGAACGAGGACGTTTTGGCTGACGGTACGCGTGTTAAGAAGAATTGGTTTGTTACGTATCATACTTATGCAATGGGGAGGATGGAGAGTATTTGGGGGAGTGATTGGGCGGAATTTAAACCGGAAAGGTGGTTTGTTGAGGATAGTGGGGTTATTCGAACCGAAAGCCCGTTTCGGTATCCGGTTTTTCATGCGGGTGCGAGGATGTGTTTGGGTAAGGAGATGGCTTATATTCAAATGAAGTCTATTGTGGCATCAGTGATGGGGAGATTTGAGCTCAATGCTGTGGATAAGGACACGTGTCCTGGGCAGCATTTGTCCTTGACCTTGAGGATCAAAGGTGGGTTGCCAGTGCGAGTCAGGCCAAGAAAATAA 1803 0.4964 MGSGHYTAHIKVFSNVQLLDENRWYNFDDSQISPISEDDVNTAAAYVLFYRRVKNDDASASNGAKSSMLSATYTHPSNLIITCSIHSLETFKSMELFSTQTLLLFLSFLTFLYLHHRKPKTTPTGFKAYPIVGTLPDFLLNRHRFLDWSTDVLRNCPTHSAVFKRPGKVHGIMTANPDNVEHVLKTNFHNYPKGERFIYLLRDFLGQGIFNSDGDLWKLQRKTASYEFNTKSLRNFAIQNVTVEIQTRLIPLLQRASESESVLDLQDVLERFAFDNICKLAFNVDPACLAAEGSGDATVGGVFMRAIEDAAALSSGRFMSVFEWVWRLKKFLNVGSEKRLRESISIVHAFADKIIRSRMETKDDTTDDMDLLSRFMATEDNSPEFLRDIVISFILAGRDTTSSGLSWFFWILSSRPDVKDKIVKEIETVRAWSEKSDSEEAGGFGYEELKELKYLHAAISEPMRLYPPVPVDSMVCLNEDVLADGTRVKKNWFVTYHTYAMGRMESIWGSDWAEFKPERWFVEDSGVIRTESPFRYPVFHAGARMCLGKEMAYIQMKSIVASVMGRFELNAVDKDTCPGQHLSLTLRIKGGLPVRVRPRK 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120915g00014 600 PRINTS P450 superfamily signature 396 413 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120915g00014 600 PRINTS P450 superfamily signature 457 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120915g00014 600 PRINTS P450 superfamily signature 537 546 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120915g00014 600 PRINTS P450 superfamily signature 546 557 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120915g00014 600 PRINTS E-class P450 group I signature 536 546 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120915g00014 600 PRINTS E-class P450 group I signature 546 569 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120915g00014 600 PRINTS E-class P450 group I signature 456 474 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120915g00014 600 PRINTS E-class P450 group I signature 405 431 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120915g00014 600 PRINTS E-class P450 group I signature 385 402 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120915g00014 600 CDD CYP86A 162 592 - -
Stsc120915g00014 600 Gene3D Cytochrome P450 108 600 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120915g00014 600 Pfam Ubiquitin carboxyl-terminal hydrolase 2 50 IPR001394 GO:0004843|GO:0016579
Stsc120915g00014 600 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 539 548 IPR017972 GO:0005506|GO:0016705
Stsc120915g00014 600 Gene3D Cysteine proteinases 1 65 - -
Stsc120915g00014 600 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 53 IPR028889 -
Stsc120915g00014 600 PANTHER CYTOCHROME P450 110 594 - -
Stsc120915g00014 600 SUPERFAMILY Cytochrome P450 113 599 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120915g00014 600 SUPERFAMILY Cysteine proteinases 2 53 IPR038765 -
Stsc120915g00014 600 Pfam Cytochrome P450 123 582 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120915g00014 Stsc-Chr120915 122684 124806 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120915g00014 118 599 Cytochrome P450 AT3G56630 59.213 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120915g00014 - - gmx:100812147 697.197