Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120915g00012 ATGGATCTTTTCTCAATGGAATCCCTTCTACTTTTTCTCTCTTTCTTCATTTTCATCTTCATCTACCTTCACCATCAATTCTACACCACCAAGACACCCTTCAAAACCTACCCTCTCCTAGGTTCACTCCCTCACTTCATCCTCAACCGCCACCGCTTCCTCGACTGGTCCACCGACATCCTCCGCCACTCCCCCACCCAAACCGCCATCTTCTTCCGCCCCGGCACCGTCCACGGCGTCATAACCGCCAACCCCGACAACGTGGAGCACATGCTCAAAACTAATTTCCATAACTACCCCAAGGGCAACCGCTTCCTCTTCCTCCTCCACGATTTCCTCGGCCACGGAATCTTCAACTCCGACGGATACCTCTGGAAACTCCAACGCAAAACCGCAAGCTACGAATTCAACACCAAATCTCTTCGAAACTTCGCCATCCAAAACGTCACCGTCGAGATCCAAACGAGGCTAATTCCCTTGCTTCAAAGAGCTTCGGAGACTGAAACCGTTCTTGATTTGCAGGACGTTCTTGAACGGTTCGCCTTTGATAACGTCTGCAAGCTCGCCTTCAACGTTGATCCTGCATGCCTCGGCGGCGGATCCACCGCCGGCAACGGTTTCATGCGCGCGTTCGAGGACGCCGCGACGCTGAGCTCCGGGAGGTTCATGAGTGCGTATCACTGGCTATGGAGAATCAGGAGGTTCCTGAATGTCGGAGACGAAAAGAGGCTCAAAGAATCGATCTCGACCGTTCACGCGTTCGCTGATGAGATCATACGGTCCAGGATGGAAGCCAAGGGCCCCACCAACACTGACGTGGACTTACTATCGCGGTTCATGGCCGCAGAGGATAACTCCCCAGGCTTTCTCCGCAATATCGTTATAAGCATGATTCTTGCAGGGCGCGATACGACGTCGTCTGCGCTGAGCTGGTTCTTTTGGATTCTTTCTTCCAGGCCTGACGTCAAAGAAAAAATAATCAAAGAAATCAAAAGCGTTCGCGAAAAGCGCGTTTGTGGAGAATCATCAGCACCGTTTGGATACGAAGAATTGAAGGAGATGAATTACTTGCTGGCGGCGATTTCGGAGGCGATGAGATTGTACCCGCCAGTGCCGGTTGACTTCAAGGAATGCTTAAAAGACGACGTTTTGCCGGATGGTACGGTTATAAAGAGGAAGTGGTTTATAATGTACCATACTTACGCAATGGGGAGGATGGAGAATATTTGGGGGAAGGATTGCAATGAATATAAGCCTGAAAGGTGGTTTGATTTTGATGAGGATGGTAATCAAGTGTGGCGAAGTGAAAGCCCGTTCCGGTATCCGGTATTTCACGGTGGACCGAGGATGTGCTTGGGGAAGGATATGGCTTACATTCAGATGAAGTCCATTGTGGCTTCTGTTTTGGAGAGGTTTGAGATTGATGCTGTGGATAAGGACACGTGTCCTGAGCACATTCTTGCTTTAACTTTGAGGATGAAAGGGGGGTTGCCTGTGAGAGTGAGAGTGAGGCTATGA 1518 0.5033 MDLFSMESLLLFLSFFIFIFIYLHHQFYTTKTPFKTYPLLGSLPHFILNRHRFLDWSTDILRHSPTQTAIFFRPGTVHGVITANPDNVEHMLKTNFHNYPKGNRFLFLLHDFLGHGIFNSDGYLWKLQRKTASYEFNTKSLRNFAIQNVTVEIQTRLIPLLQRASETETVLDLQDVLERFAFDNVCKLAFNVDPACLGGGSTAGNGFMRAFEDAATLSSGRFMSAYHWLWRIRRFLNVGDEKRLKESISTVHAFADEIIRSRMEAKGPTNTDVDLLSRFMAAEDNSPGFLRNIVISMILAGRDTTSSALSWFFWILSSRPDVKEKIIKEIKSVREKRVCGESSAPFGYEELKEMNYLLAAISEAMRLYPPVPVDFKECLKDDVLPDGTVIKRKWFIMYHTYAMGRMENIWGKDCNEYKPERWFDFDEDGNQVWRSESPFRYPVFHGGPRMCLGKDMAYIQMKSIVASVLERFEIDAVDKDTCPEHILALTLRMKGGLPVRVRVRL 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120915g00012 505 SUPERFAMILY Cytochrome P450 35 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120915g00012 505 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 444 453 IPR017972 GO:0005506|GO:0016705
Stsc120915g00012 505 Pfam Cytochrome P450 69 483 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120915g00012 505 PANTHER CYTOCHROME P450 23 499 - -
Stsc120915g00012 505 PRINTS P450 superfamily signature 442 451 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120915g00012 505 PRINTS P450 superfamily signature 300 317 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120915g00012 505 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120915g00012 505 PRINTS P450 superfamily signature 451 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120915g00012 505 CDD CYP86A 74 497 - -
Stsc120915g00012 505 PRINTS E-class P450 group I signature 441 451 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120915g00012 505 PRINTS E-class P450 group I signature 451 474 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120915g00012 505 PRINTS E-class P450 group I signature 289 306 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120915g00012 505 PRINTS E-class P450 group I signature 309 335 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120915g00012 505 PRINTS E-class P450 group I signature 358 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120915g00012 505 Gene3D Cytochrome P450 22 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120915g00012 Stsc-Chr120915 113837 115354 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120915g00012 34 504 Cytochrome P450 AT3G56630 59.958 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120915g00012 - - qsa:O6P43_006322 692.575