Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120915g00007 ATGGCAGTTTCTCCTCCTCCAACAACCCACTCTTTGGAAGCTGAATTTGAAGCTCACAACTCTGATTCCCCTCTCTTACAAATTGGAAATGATGGCCTCACTAAACGTGTCCTAAGGAAAGGTCTCTCTTGGCAAACTCCATTCTTTGGTGACCAAGTTGAAGTTCATTTCAAAGGACAAGTTGAAGATGGAGCATCTCTTGAATCCAGTTATGATAAAGGCTCCTCGTTTCGTTTCAAATTAGGCCAATGTGAAGTTATCAAAGGCTGGGATGAAGGTGTTGGGAGCATGAAGAAAGGGGAGAGAGCAATCTTCAGAATACCACCTAATTTAGCATATGGGGAAGAAGGCTCTCCACCATTTGTTCCTCCCAATGCAACTCTCGTTTTCGATATCGAATTGCTGTCTTGGAATGCCATTAGGGACCTGAATGGTGATGGAGGAATCATGAAAAAGATTCTAAAAGAGGGTGATGGATGGGCTACTCCTAAAGATGCTGATGAAGTTCTAGTGAAATATGAAGCAAGGCTAGAGAGTGGGTTGTTTTTGTCTAACTCAGCCCAAAGTGTGGAATTTAATGTAGGTGAAGGTTATCTTTGCCCTGCCATGAGTGTAGCCGTTAAGACCATGAGAAAGGGTGAGGTGGCAGAGCTAGCTATCAAATTCTCTTATGGAATCATTCAAAATTCGGATAGGACCAAGGAATCTGATGATTTTCTGCAGCCAAGTTCCAAGATAACAACCATCAAACTAGAGTTAGTTTCATGGAAAATCGTGACGGATATCACAGGCGATAAGAAAATATTTAAGAAAATTAAGAAATCCGGCGAGGGGTTCGATCGTCCCAATGAAGGATCTCGCGTGAAAGTGATATATTCTTGTAAACAAGAAGATGGAACGATCATTCAGAAGAAAGGAACAGAGGAAGAACCTTTTGAATTCACAACTCAAGAAGGACAGGTGCCTGAGGGTCTAGAAAGAGCAATAATGACAATGAAAAAATCAGAACAAGCTCTTGTGACCATAAGTGCTGAATATTCTAGTGACAACAATTTACAGGGAGAAGGAAAAGACACACCTAAAAATAATAATAATAGAAGTAGTAACAATAAAGTCCTTTACTATGAAGTTGAATTGGTTGATTTTGTTAAGGAGAAGCCATTTTGGAAGATGGAAAACAAAGAGAAATTAGAAGCTTGTGAGAGGAAGAAGCATGATGGGAATTTGATGTTTAAGGCTGAAAATTTCAGGCGTGCATCATTGGAATATGAAAAGGCTGTAAAATGCATTGAGTTTGATCATTCATTCAGTGAAGATGAGAAGCTTCATGCAAACACGTTAAGATTATCATGTAATTTGAATAATGCTGCTTGTAAACTCAAATTGGGGGATTACACTGAAGCTTCCAGATTATGCACAAAGGTACTAGAACAAGATCCTTTAAATGTGAAGGCTCTATACAGAAGATGCCAAGCATACCTGAAAACATCAGATTTGGAGAAAGCTGAGGTTGATATCAAAAGAGCACTCATTATTGACCCAAATAACAGAGAGATTAAAGTTGAGTACAAAGAACTGAAGCTCAAGCAGAAGGAATACAACAAATATGAATCCAACATCTTCAGCACAATGTTTTCAAGGATGAGCTAG 1650 0.3921 MAVSPPPTTHSLEAEFEAHNSDSPLLQIGNDGLTKRVLRKGLSWQTPFFGDQVEVHFKGQVEDGASLESSYDKGSSFRFKLGQCEVIKGWDEGVGSMKKGERAIFRIPPNLAYGEEGSPPFVPPNATLVFDIELLSWNAIRDLNGDGGIMKKILKEGDGWATPKDADEVLVKYEARLESGLFLSNSAQSVEFNVGEGYLCPAMSVAVKTMRKGEVAELAIKFSYGIIQNSDRTKESDDFLQPSSKITTIKLELVSWKIVTDITGDKKIFKKIKKSGEGFDRPNEGSRVKVIYSCKQEDGTIIQKKGTEEEPFEFTTQEGQVPEGLERAIMTMKKSEQALVTISAEYSSDNNLQGEGKDTPKNNNNRSSNNKVLYYEVELVDFVKEKPFWKMENKEKLEACERKKHDGNLMFKAENFRRASLEYEKAVKCIEFDHSFSEDEKLHANTLRLSCNLNNAACKLKLGDYTEASRLCTKVLEQDPLNVKALYRRCQAYLKTSDLEKAEVDIKRALIIDPNNREIKVEYKELKLKQKEYNKYESNIFSTMFSRMS 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120915g00007 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 50 135 IPR001179 GO:0003755
Stsc120915g00007 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 281 380 IPR001179 GO:0003755
Stsc120915g00007 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 162 230 IPR001179 GO:0003755
Stsc120915g00007 549 Gene3D - 141 257 IPR046357 GO:0003755
Stsc120915g00007 549 PANTHER PEPTIDYLPROLYL ISOMERASE 28 141 - -
Stsc120915g00007 549 SUPERFAMILY FKBP-like 26 137 - -
Stsc120915g00007 549 FunFam Peptidyl-prolyl cis-trans isomerase 27 139 - -
Stsc120915g00007 549 SUPERFAMILY FKBP-like 254 402 - -
Stsc120915g00007 549 Gene3D - 8 140 IPR046357 GO:0003755
Stsc120915g00007 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 285 383 IPR001179 GO:0003755
Stsc120915g00007 549 MobiDBLite consensus disorder prediction 349 368 - -
Stsc120915g00007 549 Gene3D - 258 385 IPR046357 GO:0003755
Stsc120915g00007 549 ProSiteProfiles TPR repeat profile. 483 516 IPR019734 GO:0005515
Stsc120915g00007 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 166 257 IPR001179 GO:0003755
Stsc120915g00007 549 FunFam Peptidylprolyl isomerase 388 543 - -
Stsc120915g00007 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 50 138 IPR001179 GO:0003755
Stsc120915g00007 549 SMART tpr_5 483 516 IPR019734 GO:0005515
Stsc120915g00007 549 SMART tpr_5 449 482 IPR019734 GO:0005515
Stsc120915g00007 549 Gene3D Tetratricopeptide repeat domain 386 543 IPR011990 GO:0005515
Stsc120915g00007 549 Pfam Tetratricopeptide repeat 460 515 - -
Stsc120915g00007 549 SUPERFAMILY FKBP-like 143 225 - -
Stsc120915g00007 549 SUPERFAMILY TPR-like 394 545 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120915g00007 Stsc-Chr120915 51007 53919 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120915g00007 26 548 Calmodulin-binding Proteins AT5G48570 52.930 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120915g00007 - - gmx:100785412 815.068