LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc120914g00002	ATGGATGCCAAAGACATCTTGGGATTGCCCAAGAATTCGTTCCCTCCTCAGGACAAGAAGTCTCGACCTCCCAAAGAGTCTCACAGAAAACCTGATGGAATTTCCCGCGAGGTTTATGCGCTCACTGGTGGATTGGCTCCTCTTATGCCTGCTCTTGATTCATCTCAATTGAAAAAAAAGCCTCCATCAGACGAAAAGGTTGCTTGGCAGTGGCTTGGTTTCACCAGTTCTGCTCGTAAAGATAATCTTCATCTTTATCATTGGGTCCGAGTTGTAAATGGTGTTCCACCAACTGGTGACTATTCTTTTGCCAAGTATAACAGGTCTGTTGACATTACAAAATACACAAATGAGGAATATGAGAAGTATTTGACAGATCCTAGGTGGACCAAGGAAGAGACAGATCAGCTGTTTGAATTGTGCGAAAGATTCGATCTCCGATTCATTGTCATAGCTGATAGGTTCCCATCGTCTCGGACTGTGGAAGAATTGAAGGAGCGATATTACAGTGTATCACGGGCTTTATTAATTGCTAGGAATCCATCTCCTGTGGACATTGCATCACATCCGCTTGTTAAGGAACCATACAATGTTTCACATGACTTGGAGCGGAAACGAGCAATGTCCTTGGTCCTCTCTCAAACTAGGCAACAAGAGCAAAGAGATGAAGAGGTTCTTGCTGAAGCAAAAAGAATAGCTCAGTCACGCATATCTGCTAAGGTTTCTCAAGAGGCTGAGATGGCTGTTGCTTCAAATGCTGGTGTAGAAGTTACAGAGAGGACTATCCAAGGTGAAACTGTATCTCCACTTCCGTCGAATGCACAACATCCATCGATACCTGTGCCTTCTTCAATGTCAACAGAAAATGCATCAACTCTGGCTTCTCTTCGCATTCTTCGTGTATATCTGAGGACCTATGCACTTGAGCAAATGTTGCAAGCTGCAAGCTCAACTGCTGGATTGCGAACTATCAAACGGGTTGAACAAACTTTGCAAGACCTTGGGGTCAACTTGAAACCAAGGGTTCCAACAAAATCCGTTTGTGCAGAACATCTTGAGCTAAGGAAAGAAATACTAACGTTGTTGAATCTTCAAAAGCAGCTGCAATATAAGGAGGCTGAAGGTTTGCCTTTTCGTGAAGGGTCCTACACTGAAACACCAGGAACACCAAAGCATTTTCATCATGGTAAGCAGGATCGAGCATTTGTTCCGGACCCAAGTTTTGGAGGGGAGAGGACTGGCAAAAGGGACCAAAAGCGCAAGGCACCTGGACGCCTTTCAGAAGCACCATCCTCGCCAGCCCAATCTAAAAGACCCCGAAAATTAAAGGCATCTGATTTTTAG	1344	0.4457	MDAKDILGLPKNSFPPQDKKSRPPKESHRKPDGISREVYALTGGLAPLMPALDSSQLKKKPPSDEKVAWQWLGFTSSARKDNLHLYHWVRVVNGVPPTGDYSFAKYNRSVDITKYTNEEYEKYLTDPRWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKERYYSVSRALLIARNPSPVDIASHPLVKEPYNVSHDLERKRAMSLVLSQTRQQEQRDEEVLAEAKRIAQSRISAKVSQEAEMAVASNAGVEVTERTIQGETVSPLPSNAQHPSIPVPSSMSTENASTLASLRILRVYLRTYALEQMLQAASSTAGLRTIKRVEQTLQDLGVNLKPRVPTKSVCAEHLELRKEILTLLNLQKQLQYKEAEGLPFREGSYTETPGTPKHFHHGKQDRAFVPDPSFGGERTGKRDQKRKAPGRLSEAPSSPAQSKRPRKLKASDF	447

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc120914g00002	447	MobiDBLite	consensus disorder prediction	379	447	-	-
	Stsc120914g00002	447	FunFam	DNA methyltransferase 1-associated protein 1	97	184	-	-
	Stsc120914g00002	447	CDD	SANT_DMAP1_like	129	171	-	-
	Stsc120914g00002	447	Gene3D	-	98	184	-	-
	Stsc120914g00002	447	SMART	sant	125	174	IPR001005	-
	Stsc120914g00002	447	Pfam	SANT/Myb-like domain of DAMP1	101	175	IPR032563	-
	Stsc120914g00002	447	Pfam	DNA methyltransferase 1-associated protein 1 (DMAP1)	318	374	IPR008468	GO:0005634\|GO:0045892
	Stsc120914g00002	447	SUPERFAMILY	Homeodomain-like	125	176	IPR009057	-
	Stsc120914g00002	447	MobiDBLite	consensus disorder prediction	1	33	-	-
	Stsc120914g00002	447	PANTHER	DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER	1	429	IPR027109	GO:0006281\|GO:0006338\|GO:0035267\|GO:0043967\|GO:0043968
	Stsc120914g00002	447	MobiDBLite	consensus disorder prediction	410	424	-	-
	Stsc120914g00002	447	MobiDBLite	consensus disorder prediction	267	286	-	-
	Stsc120914g00002	447	MobiDBLite	consensus disorder prediction	18	33	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc120914g00002	Stsc-Chr120914	6621	14138	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Stsc120914g00002		DMAP1	9.6e-06	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc120914g00002	K11324		-	cave:132170322	703.36