Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120913g00021 ATGTGTAGTAGAGGGCATTGGAGGCCAGCTGAGGATGAGAAGCTTAGGGAGCTTGTGGAACGCTATGGACCTCATAATTGGAATGCCATAGCTGACAAGCTTCGTGGAAGATCAGGGAAAAGTTGTAGGTTAAGATGGTTCAATCAACTGGATCCAAGAATAAACAGAAATCCTTTCACAGAGGAAGAAGAAGAGAGGCTTTTAGCATCTCACAGGATTCATGGAAACAGATGGTCAGTGATTGCAAGACACTTCCCTGGAAGAACTGATAATGCTGTCAAGAATCATTGGCATGTCATGATGGCGAGAATTCGCAGAGAAAGATCTAAACTCTATGCAAAACGACCACTTCATCATCTTCATCATAATAGAACAACATTTTTTTCTCCAAACCTACAACAACAACAACAAGAGGATCATGATGATGACATAACAAAAAATAATATATCCTCTCTTGTTGAAAAGTTTCATCATGGAAAATATAACTACCCTTCTTGTCTCACTTATGCAACTTTCCAACTTCCTAACAAGTTTCACTTTCATCATCAAGGTCCAAGTTCTTGTGCTACATTGCTTCAAGAGAGAAGTAGTCAATCAATTGAGTTCTATGACTTTCTTCGAGTAAACACAGATTCCAACAAGAGTGAAGTGAGTAACAACAACAACGGCAAAAAGGATGATGAAGAAGTGAATCAAGATCCTGTTGGCCATCACAACAAGGATGGAATTCCATTCATTGATTTTTTGTCTACTGCTCAAAGCTCCTAA 768 0.3906 MCSRGHWRPAEDEKLRELVERYGPHNWNAIADKLRGRSGKSCRLRWFNQLDPRINRNPFTEEEEERLLASHRIHGNRWSVIARHFPGRTDNAVKNHWHVMMARIRRERSKLYAKRPLHHLHHNRTTFFSPNLQQQQQEDHDDDITKNNISSLVEKFHHGKYNYPSCLTYATFQLPNKFHFHHQGPSSCATLLQERSSQSIEFYDFLRVNTDSNKSEVSNNNNGKKDDEEVNQDPVGHHNKDGIPFIDFLSTAQSS 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120913g00021 255 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Stsc120913g00021 255 SMART sant 3 52 IPR001005 -
Stsc120913g00021 255 SMART sant 55 103 IPR001005 -
Stsc120913g00021 255 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Stsc120913g00021 255 PANTHER MYB PROTEIN-RELATED 4 198 - -
Stsc120913g00021 255 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Stsc120913g00021 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Stsc120913g00021 255 MobiDBLite consensus disorder prediction 212 243 - -
Stsc120913g00021 255 FunFam MYB transcription factor 4 55 - -
Stsc120913g00021 255 MobiDBLite consensus disorder prediction 220 236 - -
Stsc120913g00021 255 Pfam Myb-like DNA-binding domain 7 67 - -
Stsc120913g00021 255 Gene3D - 4 55 - -
Stsc120913g00021 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Stsc120913g00021 255 CDD SANT 7 48 IPR001005 -
Stsc120913g00021 255 CDD SANT 58 101 IPR001005 -
Stsc120913g00021 255 Gene3D - 57 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120913g00021 Stsc-Chr120913 112351 115522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120913g00021 1 255 MYB Transcription Factor Family AT1G17950 54.826 6.89e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc120913g00021 Myb_DNA-bind_6 2.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120913g00021 K09422 - gmx:100811746 332.028