Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120913g00013 ATGGCTAATTCTAGAAAAGATAATATACCAATGCTGTCAGACACTGATCCAAAGCAATCAAATGAACCTATTGATTCTAAATTCCGGAATCCTGTACCAAGGACACGAAGCATATCAATTTCTATTCCCATGTTCTCAATGGAACCACCTGAAAGAGAAAGTAATATTAGGGGACACACAGGTCCTCTTCGGAGTCAGAGAAAAATCCCACTTAATCAGATGAGTGGTCCATTGTATGTTTCCAATAAATCTGGAGTTCCCTTCCGGGCAGGGAAGCAACCAGCAGAAACTAAGACAGAAAAATTCCCTTCGTTCCGTGGCGGCATGGGGGAAAGTGATTTACATAACAACTATAATGGCAAAAATGAACATTTAGTAAGGTCTGGTCCCCTGGGAATGTGTAATGATCCGTATTGCACGACTTGCCCAACTTACTTCAAGGCTACTCAACAAAGGAATTCAAAGGCATCGGGTATATTCAATCCAAAGTTTCACAATTCACTTTACGGGGATGCCAAGTGTTGGGCAAGAAGACTTTCTGCCTTCTTGATTCCATATGTACCCCGAGTTATGAATCCTCATACAAAACTTGTTCAACAATGGAATAAGTTTTTTGCAATTTGTTGCTTGTTGGCAATTTTTGTGGATCCATTATTTTTCTTCTTGCTCTCTGTGCGGAAGGATTATAAATGTATTGTTATGAACACACCTATGACAACATTGCTTGTGTTTCTTAGAAGCATAAACGATTTTGTATACCTCATGAACATTATTCTTCAGTTTAGGTTGGCTTATGTGGCTCCAGAGTCTAGGGTGGTCGGTGCCGGGGAATTAGTTGACCATCCTAAGAAAATTGCTCTTCATTACCTTCAGACATATTTTTTTCTCGACTTATTAGTTGTAATTCCACTTCCTCAGATAATCATATTGTTTGTAATACCAAAAAACTTGGGATCATCAGGAGCAAACTATGCAAAGAATCTTTTGCGAGCCGCTATCCTTGTCCAGTATATCCCCAGATTATGTAGGTTTCTACCAATGCTAATTTCACCAACTGGATTCGTATTTGAGTCAGCATGGGCAAATTTCTTTATAAATCTTCTCACCTTTATGCTCTCTGGTCATGTTGTTGGGTCATGGTGGTATCTCTTTGCTTTGCAGAGGGTTAATCAATGTTTACGAGATGCCTGCAAGAAATTTGTTACTGATGACTGCAAAAGATTCATCGACTGTGGTCATGAAAATAATCCTGAAAATTATCAAAATGAACCGAAATGGAATGTTTGGAAAAATGACACTAATTCAATGGCTTGTTTTACTGAAGATGGTTTTTCTTATGGGATTTATCTTAAAGGTGTCAACCTAACTACACAACATAATGTGATCACCAGATATGTATATTCATCATTTTGGGGTTTCCAGCAAATTAGTACTCTGGCTGGAAATTTGACCCCGAGCTACTTTGTTTGGGAAGTCCTTTTCACCATGGCCATCATAGGAATGGGACTCTTGCTTTTTGCTCTTCTCATTGGAAACATACAGAACTTTCTTCAGGCTCTCGGTCGCAGGAGGCTAGAAATGTCACTTAGGCAACGTGATGTTGAGCAATGGATGAGGCATCGACGCTTAGCAGAAGATCTGAAAAGGAGAGTGCGACAAGCTGAACGTTACAACTGGGCTGCAACAAGAGGGGTGAATGAAGAAGTGCTACTAGAGAATTTGCCAGAAGACCTTCAGCGGGACATCAGACGTCATCTCTTTAAATTTGTTAAGAAAGTTAGAATTTTTGCCTTGATGGATGAACCTATCTTGGATGCCATCTGCGAAAGACTAAGGCAAAAAACTTACATCAAAGGAAGCAAAGTTTTATACAATGGTGGTCTGGTAGAGAAGATGGTTTTTATCGTGCGTGGGAAATTGGAGAGCATAGGCGAAGACGGAAATGTATCTTTATCCGAAGGGGATGCTTGCGGCGAAGAACTTTTGACTTGGTGTCTTGAGCATACTTCGGCAAACAGAGATGGTGGAAAAGTAAAGATACCAAGACAGAGGTTAGTAAGCAATAGAACAGTTACTTGCTTAACAAATGTGGAGGCTTTTTCTCTCAGAGCTGCAGACCTTGAAGAAGTTACAAGCCTTTATGCGCGATTCCTGAGGAATCCTCGTGTTCACGGAGCCATAAGGTATGAATCACCTTATTGGAGATGCTTTGCAGCAACGCGTATTCAGGTTGCATGGAGGTACAGGAAGAAACGTCTTAGTAGAACTGACACTTCACTATCACATGAAACATTATATGCGTAG 2304 0.4036 MANSRKDNIPMLSDTDPKQSNEPIDSKFRNPVPRTRSISISIPMFSMEPPERESNIRGHTGPLRSQRKIPLNQMSGPLYVSNKSGVPFRAGKQPAETKTEKFPSFRGGMGESDLHNNYNGKNEHLVRSGPLGMCNDPYCTTCPTYFKATQQRNSKASGIFNPKFHNSLYGDAKCWARRLSAFLIPYVPRVMNPHTKLVQQWNKFFAICCLLAIFVDPLFFFLLSVRKDYKCIVMNTPMTTLLVFLRSINDFVYLMNIILQFRLAYVAPESRVVGAGELVDHPKKIALHYLQTYFFLDLLVVIPLPQIIILFVIPKNLGSSGANYAKNLLRAAILVQYIPRLCRFLPMLISPTGFVFESAWANFFINLLTFMLSGHVVGSWWYLFALQRVNQCLRDACKKFVTDDCKRFIDCGHENNPENYQNEPKWNVWKNDTNSMACFTEDGFSYGIYLKGVNLTTQHNVITRYVYSSFWGFQQISTLAGNLTPSYFVWEVLFTMAIIGMGLLLFALLIGNIQNFLQALGRRRLEMSLRQRDVEQWMRHRRLAEDLKRRVRQAERYNWAATRGVNEEVLLENLPEDLQRDIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYIKGSKVLYNGGLVEKMVFIVRGKLESIGEDGNVSLSEGDACGEELLTWCLEHTSANRDGGKVKIPRQRLVSNRTVTCLTNVEAFSLRAADLEEVTSLYARFLRNPRVHGAIRYESPYWRCFAATRIQVAWRYRKKRLSRTDTSLSHETLYA 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120913g00013 767 Pfam Ion transport protein 201 523 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc120913g00013 767 Gene3D Helix hairpin bin 523 587 - -
Stsc120913g00013 767 MobiDBLite consensus disorder prediction 1 34 - -
Stsc120913g00013 767 ProSiteProfiles cAMP/cGMP binding motif profile. 595 662 IPR000595 -
Stsc120913g00013 767 SUPERFAMILY cAMP-binding domain-like 523 718 IPR018490 -
Stsc120913g00013 767 CDD CAP_ED 595 719 IPR000595 -
Stsc120913g00013 767 SUPERFAMILY Voltage-gated potassium channels 193 523 - -
Stsc120913g00013 767 Gene3D Jelly Rolls 593 716 IPR014710 -
Stsc120913g00013 767 MobiDBLite consensus disorder prediction 1 19 - -
Stsc120913g00013 767 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 134 756 - -
Stsc120913g00013 767 MobiDBLite consensus disorder prediction 85 114 - -
Stsc120913g00013 767 Gene3D - 202 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120913g00013 Stsc-Chr120913 67996 73927 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120913g00013 2 672 Ion Channels AT3G17700 61.324 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120913g00013 K05391 - gmx:100795955 1173.3