Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120913g00005 ATGGCTGGTTTTGAAAATGATGAGCTGCCAATGCTGTCGGAAAAGGATGCAGAGCAATATGATGAAACCCTGAATTCCAAATTGCAAAGATTCTTATCCAGGACAAAAAGTTCAATTGCAATTCCTATGAGCACTCTGGAGTCATATGATAGTGAAACTAGTCTTGTTGGACACACTGGTCCACTGATGAGTGAGAGAAAAACAACCCCCTTTGTACAAATGAGCGGTCCGCTATATGCTACCGCCGGAACTGGAGGTCATTTACAGCAGAGGATGGTTGTTACTGGAAGAAAAGAAGATGAAAGAAAGACAGAAAAATTTGATGCTTTCCGCAGCACCGGTTTGAATTACTGGCATAACAACAAACATGATAAGGAAAATGAACACTTAATGAGGTCTGGACAGCTTGGAATGTGTGATGATCCTTATTGCACTACTTGCCCAACATATTTCAAGGCTTCTCACTATAGAAATCCGAAAGCTTCAACATTATTTGATCCCAAGTTCCACAATGTTCTTTATGGGGATGCCAAGGGTTTTGCAAGAAAGTTTTATTCCTTTTGTCGTTCGCACGTTCCTGGAGTTATAAATCCTCACACTAAATTCATACAACGATGGAACAAGATTTTGGCCATTTTTTGCTTGGTTGCTATTTTCGTCGATCCATTGTTTTTCTTCGTATTTTATGCAAGAGAGGATAATAATTGTATTGTTATCAACTGGTCAATGACAACAACACTTGTTATTGTTAGAAGCTTGAATGATTTGGTATATTTCTTTAACATTCTTCTCCAGTTCAGATTGGCTTATGTTTCTCCTGAGACAAGAGTGGTTGGTACTGGAGATTTAGAGGACCATCCAAAGAAAATCGCACTTCATTACATTCGGGGTTATTTTTTTCTCGACTTATTTGTTGTATTTCCGCTTCCTCAGATAATGATATTGTTTGTCCTGCCAAAATCCCTTGGGGGAGCAAATTATGCTAAGAATCTTCTGCGTGCAGCGATCCTTGTGCAGTACATCCCCAGATTGTTTAGATTTCTGCCAATGCTAATTGGCCAATCTCCATCAGGATTTATATTTGAGTCAGCCTGGGCAAATTTTATAATAAACCTTCTAATTTTTATGCTATCTGGACATGTTGTTGGCTCCTGCTGGTACCTCTTTGGTCTACAGAGGGTTAACCAATGTTTGCGAAATGCCTGCCATAACTCTAAGATCCCCGGATGCATGGCATTCATTGATTGTGGGCATGGTCATGATGGAATCTTTCAGCTTGACCAAACATCAAATCAGTGGAACAACAATGCTGATGCTAATGCCTGCTTGAGCCCCCCATCTAATGGTAGTGGTTTTGCTTATGGGATATATCAAAATGCTGTACCTCTTACTACAGAAACTAATGTGATCAACAAATACATCTATGCTTTGTTTTGGGGATTTCAGAATTTTCTTCAAGCTCTTGGGCGAAGGAGGCTAGAAATGCAACTCAGAGGCCGAGATGTGGAGCAATGGATGAGCCATCGACGCTTACCAGAAAATCTAAGAAGGAGAGTACGACAGGCCGAACGTTATTCTTGGGCTGCGACGAGGGGAGTGAACGAAGAAATGCTTATGGAAGATTTGCCAGAAGATCTTCAGAGAGACATAAGGCGTCATCTCTTCAAATTTATTAAGAAAGTTCGAATTTTTGCTTTGATGGATGAACCTATCCTAGATGCAATTTGTGAGAGATTAAGACAAAGGACATATATAAAAGGAAGTAAAATATTGAGTATGGGTGGTCTGGTAGACAAGATGGTATTTGTGGTGCGAGGAAAGCTCGAGAGCGAAGGAGAAGATGGAATTAGACTTCCATTATGCGAAGGGGATGCCTGTGGCGAAGAACTTCTAACATGGTATCTTGAACATTCTTCTGTTAGCACAGATGGCAGGAAAGTAAGGCTTCCAGGACAAAGGTTGCTTAGCAACAGAACAGTGAGATGCTTAACAAATGTAGAGTCATTTTCGCTACGCGCTGCAGACCTTGAAGAAGTGACAATCCTCTTCACTAGATTCTTGCGGAGTCCGCGTGTGCAAGGGGCCTTAAGGTATGAATCACCTTATTGGAGATCCTTGGCTGCAATTCGTATTCAAGTTGCATGGAGATACAGGAAGAAACGCTTAAATCGTGCTGATTCTAAAGTTTAA 2190 0.4087 MAGFENDELPMLSEKDAEQYDETLNSKLQRFLSRTKSSIAIPMSTLESYDSETSLVGHTGPLMSERKTTPFVQMSGPLYATAGTGGHLQQRMVVTGRKEDERKTEKFDAFRSTGLNYWHNNKHDKENEHLMRSGQLGMCDDPYCTTCPTYFKASHYRNPKASTLFDPKFHNVLYGDAKGFARKFYSFCRSHVPGVINPHTKFIQRWNKILAIFCLVAIFVDPLFFFVFYAREDNNCIVINWSMTTTLVIVRSLNDLVYFFNILLQFRLAYVSPETRVVGTGDLEDHPKKIALHYIRGYFFLDLFVVFPLPQIMILFVLPKSLGGANYAKNLLRAAILVQYIPRLFRFLPMLIGQSPSGFIFESAWANFIINLLIFMLSGHVVGSCWYLFGLQRVNQCLRNACHNSKIPGCMAFIDCGHGHDGIFQLDQTSNQWNNNADANACLSPPSNGSGFAYGIYQNAVPLTTETNVINKYIYALFWGFQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPENLRRRVRQAERYSWAATRGVNEEMLMEDLPEDLQRDIRRHLFKFIKKVRIFALMDEPILDAICERLRQRTYIKGSKILSMGGLVDKMVFVVRGKLESEGEDGIRLPLCEGDACGEELLTWYLEHSSVSTDGRKVRLPGQRLLSNRTVRCLTNVESFSLRAADLEEVTILFTRFLRSPRVQGALRYESPYWRSLAAIRIQVAWRYRKKRLNRADSKV 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120913g00005 729 Gene3D Jelly Rolls 561 685 IPR014710 -
Stsc120913g00005 729 SUPERFAMILY cAMP-binding domain-like 491 680 IPR018490 -
Stsc120913g00005 729 Gene3D Helix hairpin bin 490 555 - -
Stsc120913g00005 729 ProSiteProfiles cAMP/cGMP binding motif profile. 563 631 IPR000595 -
Stsc120913g00005 729 Pfam Ion transport protein 208 485 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc120913g00005 729 CDD CAP_ED 563 679 IPR000595 -
Stsc120913g00005 729 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 140 483 - -
Stsc120913g00005 729 SUPERFAMILY Voltage-gated potassium channels 198 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120913g00005 Stsc-Chr120913 34266 41716 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120913g00005 5 641 Ion Channels AT3G17700 54.348 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120913g00005 K05391 - gmx:100795427 1143.26