Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120911g00012 ATGTTAACTTCTCTCACAAGCACTATTATTTGTAGGATTGCCTTTGGAAGAAGGTATGAAGATGAAGGAGTTGAGAGGAGTAGGTTCCATGATTTGTTCAATGAAATTCAAGCTATGATGACTAGCTTCTTTGTTTCGGATTATATTCCTTTCTTGGGTTGGATTGATAAAGTCAATGGAATGCATGCACGTCTCGATAGAACTCTCAAGAAGTTGGATAAGTTCTATCAAGAAGTGATTGATGAACACATGGATCCTAATAGAGACACTTCCAATGGAGAAGATATTATTGATGTTTTGCTTGAATTGAAGAAGCACCAATCATTGTCTGTTGAGTTCACTATTGATCACATCAAAGCACTCTTCTTGGACATACTTTTAGCAGGAACAGATACAACTGCCGCTACATCAGTTTGGGCTATGACTGCACTAATAAAAAATCCAAGAGTGATGAAAAAAGTTCAAGAAGAAGTTAGAGACTCTAGAGGCCAAAAAGATTTCTTAGAAGAAGAAGATATTCAAAAGTGTAGTTATTTAAAGGCTGTAATAAAAGAAACATTGAGATTATACCCGGCAGGACCATTGCTTGTGCCAAAAGAAACAAATGAAAAGTGCACTATAAATGGCTACGAAATTCCGAGTAAGACTATAGTGTATGTGAATGCTTGGGCTATTCATCGCGATCATGAGTCTTGGAAAGACTCATATGAATTTTATCCGGAGAGATTCATAGGTAATAATATAGATTTTCTTGGACAAAATTTTGAGCTAATTCCATTTGGTGCTGGTCGAAGAATTTGTCCAGGTATAAATATGGCACTTGCTTCACTTGACCTTATTCTTGCCAATCTTCTTTACTCCTTTGATTGGGAGCTTCCAGAAGGGATGGCAAAAGAAGATATTGATACTCAAGTGTTGCCTGGATTAACACAACATAAGAAGAATCCTCTTTACCTTATTGCCAAAAATTACAACAAGGGTAATTAG 987 0.3637 MLTSLTSTIICRIAFGRRYEDEGVERSRFHDLFNEIQAMMTSFFVSDYIPFLGWIDKVNGMHARLDRTLKKLDKFYQEVIDEHMDPNRDTSNGEDIIDVLLELKKHQSLSVEFTIDHIKALFLDILLAGTDTTAATSVWAMTALIKNPRVMKKVQEEVRDSRGQKDFLEEEDIQKCSYLKAVIKETLRLYPAGPLLVPKETNEKCTINGYEIPSKTIVYVNAWAIHRDHESWKDSYEFYPERFIGNNIDFLGQNFELIPFGAGRRICPGINMALASLDLILANLLYSFDWELPEGMAKEDIDTQVLPGLTQHKKNPLYLIAKNYNKGN 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120911g00012 328 PRINTS E-class P450 group I signature 5 23 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00012 328 PRINTS E-class P450 group I signature 267 290 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00012 328 PRINTS E-class P450 group I signature 137 163 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00012 328 PRINTS E-class P450 group I signature 221 245 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00012 328 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00012 328 PRINTS E-class P450 group I signature 257 267 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00012 328 PRINTS E-class P450 group I signature 117 134 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00012 328 CDD CYP71-like 1 317 - -
Stsc120911g00012 328 Coils Coil 151 171 - -
Stsc120911g00012 328 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 260 269 IPR017972 GO:0005506|GO:0016705
Stsc120911g00012 328 Gene3D Cytochrome P450 1 323 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00012 328 PRINTS P450 superfamily signature 267 278 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00012 328 PRINTS P450 superfamily signature 128 145 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00012 328 PRINTS P450 superfamily signature 258 267 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00012 328 PRINTS P450 superfamily signature 181 192 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00012 328 PANTHER CYTOCHROME P450 71B11-RELATED 1 322 - -
Stsc120911g00012 328 SUPERFAMILY Cytochrome P450 2 322 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00012 328 Pfam Cytochrome P450 2 316 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00012 328 FunFam Predicted protein 126 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120911g00012 Stsc-Chr120911 108989 111307 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120911g00012 1 319 Cytochrome P450 AT4G31500 49.068 4.37e-114 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120911g00012 - - gmx:100801312 486.108