Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120911g00011 ATGGTTTCACCACTTGTCCTAATTCTATGTCTAACTCTTCCTTTGATCTTCTTCTTCCAAAAACAAAGAACTCTAAAGAACAAAGCCTTTCCACCATCTCCAAAAGGCCTCCCAATAATTGGAAATCTTCACCAATTAGGTAATTCTTCACTTTTTTTTCAGCTATTTGAACTCTCAAAGACATATGGCCCTATATTCTCCCTTCAATTAGGTCTAAGGCGAGCAATTGTTATTTCATCTCCTAAATTGGCCAAAGAAGCATTGAAAAATCATGATCGAGTATTTGCTGGAAGACCTTCAAACTTAATTGGTCCGCAAAAATTGACCTATAATGGGTTAGGGATATCTTTTTCTCCGTACAATCAATATTGGAGAGAAACTAGAAAAACATGTGTAGCTCATATTTTTAGCTCTAAGCGTGTATCAAGCTTTTCTTCAGTAAGAACATTTGAGGTCAAGAACTTGATCAAGAAAATATCAAGCCATGCATCATCAAAAAAGGTGACAAATTTGAATGAAGCCTTGATTTCTCTATCAAGCACTATTATTTGTAGGATTGCCTTTGGAAGAAGGTATGAAGATGAAGGAGTTGAAAGGAGTAAGTTCCATGATTTGCTGAATGAATGTCAAGCAATGTTGGCTGGCTTCTTTGTTTCGGATTTTATTCCTTTCTTGGGTTGGATTGATAGACTCAATGGAATGCATAAACGTCTTGATAGAATTTTCAAGGAATTGGATAAGTTCTATCAAGAAGTGATTGATGAGCACATGGATCCTAATAGAGACACTTCCAATGGAGAGGATATCATTGATGTTTTGCTTCAACTGAAGAAGCACCAATCATTATCCTTTGACCTCACTATTGATCACATCAAAGCACTCTTCGTGGACATACTTGTAGCAGGAACAGATACAACTGCTGCTACAACAGTTTGGGCCATGACTGCACTAATAAAAAATCCAAGAGTTATGAAAAAAGTTCAGAAAGAAGTTAGAAACTTTGGAGGACAAAAAGATTTCTTAGAAGAAGAAGATATTCAAAAGTGCAGCTATTTAAAGGCTATGATAAAAGAAACATTAAGATTGTATCCACCAGGACCATTACTTGTGCCAAAAGAAACAAATGAAAAGTGCAGTATAAATGGCTACGAAATTCCAAGCAAGACTATAGTGTATGTGAATGTCTGGGCAATTCACCGAGATTATGAGTTTTGGAAAGACCCATATGAATTTTATCCCGAAAGATTCTTAGACAGTGATATTGATTTTCTTGGACAAAATTTTGAGCTGATTCCATTTGGTGCTGGTCGAAGAATTTGCCCAGGCATGCATATGGCACTTGCTTCACTTGACCTTATTCTTGCGAATCTTCTTCACTCCTTTGATTGGGAACTTCCAGAAGGGATGACAAAAGAAGATATTGATACTCAAGTGTTGCCTGGAATAACACTACTTAAGAAGAATCCTCTTTATCTTATTGCAAAAATTTTTAACAAGGGTTAG 1503 0.3619 MVSPLVLILCLTLPLIFFFQKQRTLKNKAFPPSPKGLPIIGNLHQLGNSSLFFQLFELSKTYGPIFSLQLGLRRAIVISSPKLAKEALKNHDRVFAGRPSNLIGPQKLTYNGLGISFSPYNQYWRETRKTCVAHIFSSKRVSSFSSVRTFEVKNLIKKISSHASSKKVTNLNEALISLSSTIICRIAFGRRYEDEGVERSKFHDLLNECQAMLAGFFVSDFIPFLGWIDRLNGMHKRLDRIFKELDKFYQEVIDEHMDPNRDTSNGEDIIDVLLQLKKHQSLSFDLTIDHIKALFVDILVAGTDTTAATTVWAMTALIKNPRVMKKVQKEVRNFGGQKDFLEEEDIQKCSYLKAMIKETLRLYPPGPLLVPKETNEKCSINGYEIPSKTIVYVNVWAIHRDYEFWKDPYEFYPERFLDSDIDFLGQNFELIPFGAGRRICPGMHMALASLDLILANLLHSFDWELPEGMTKEDIDTQVLPGITLLKKNPLYLIAKIFNKG 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120911g00011 500 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 433 442 IPR017972 GO:0005506|GO:0016705
Stsc120911g00011 500 FunFam Cytochrome P450 83B1 17 493 - -
Stsc120911g00011 500 Pfam Cytochrome P450 31 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00011 500 Coils Coil 324 344 - -
Stsc120911g00011 500 SUPERFAMILY Cytochrome P450 31 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00011 500 CDD CYP71-like 61 490 - -
Stsc120911g00011 500 PRINTS E-class P450 group I signature 430 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00011 500 PRINTS E-class P450 group I signature 394 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00011 500 PRINTS E-class P450 group I signature 290 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00011 500 PRINTS E-class P450 group I signature 59 78 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00011 500 PRINTS E-class P450 group I signature 83 104 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00011 500 PRINTS E-class P450 group I signature 178 196 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00011 500 PRINTS E-class P450 group I signature 353 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00011 500 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00011 500 PRINTS E-class P450 group I signature 440 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00011 500 Gene3D Cytochrome P450 23 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00011 500 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00011 500 PRINTS P450 superfamily signature 301 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00011 500 PRINTS P450 superfamily signature 431 440 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00011 500 PRINTS P450 superfamily signature 440 451 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00011 500 PANTHER CYTOCHROME P450 71B11-RELATED 13 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120911g00011 Stsc-Chr120911 103789 106181 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120911g00011 5 492 Cytochrome P450 AT4G31500 47.658 2.38e-163 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120911g00011 - - gmx:100801312 703.745