Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120911g00010 ATGGATGAAGAAAATATCAAGTCATGCATCATCAAAAAAGATTATATTCCTTTCTTGGGTTGGATTGATAGACTAAATGGAATGCATGCCCGTCTTGATAGAATTTTCACGGAATTGGATAAGTTCTATCAAGAAGTGATTGATGAGCACATGGATCCTAAGAGAGACACTTCCTATGGTGAGGATATCATTGATGTTTTGCTTCAATTGAAGAAGCACCAATCACTATCCTTTGACCTCACTATGGATCACGTCAAAGCACTCTTCCTGGCTGTAATAAAAGAAACATTAAGACTATATCCGCCAGCACCATTACTTGTACCAAAAGAAACAAATGAAAAATGTAGTATAAATGACTACGAAATTCCAAGCAAAACTATAGTGTACGTGAATACTTGGGCTATTCATAGAGATCCTGAAGCTTGGAAAGACCCACATGAATTTTGTCCTGAGAGATTTTTAGACAATGATATAGATTTTCTTGGACAATATTTCGAGCTGATTCCATTTGGTGCTGGTAGAAGAATTTGCCCAGGTATAAATATGGCACTTGCTTCACTTGACCTTATTCTTGCTAATCTTCTTTACTCCTTTGATTGGAAACTTCCAGAAGGGATAACAAAAGAAGATATTAATACTCAAGCGTTGCCTGGAGTAACACAACTTAAGAAGAATCCTCTTTATCTTATTGCAAAAAATAAGAAGGGTGAGTTACTTAAGGCTGCGTTTGGTTCTAAGACTGGGACTGAGAGACTGAGACTGGGAGACTGGGACTGA 777 0.3732 MDEENIKSCIIKKDYIPFLGWIDRLNGMHARLDRIFTELDKFYQEVIDEHMDPKRDTSYGEDIIDVLLQLKKHQSLSFDLTMDHVKALFLAVIKETLRLYPPAPLLVPKETNEKCSINDYEIPSKTIVYVNTWAIHRDPEAWKDPHEFCPERFLDNDIDFLGQYFELIPFGAGRRICPGINMALASLDLILANLLYSFDWKLPEGITKEDINTQALPGVTQLKKNPLYLIAKNKKGELLKAAFGSKTGTERLRLGDWD 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120911g00010 258 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 170 179 IPR017972 GO:0005506|GO:0016705
Stsc120911g00010 258 Pfam Cytochrome P450 91 225 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00010 258 Gene3D Cytochrome P450 90 221 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00010 258 Gene3D Cytochrome P450 5 89 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00010 258 PRINTS E-class P450 group I signature 167 177 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00010 258 PRINTS E-class P450 group I signature 177 200 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00010 258 PRINTS E-class P450 group I signature 131 155 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00010 258 PRINTS E-class P450 group I signature 90 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00010 258 PANTHER CYTOCHROME P450 71B11-RELATED 12 90 - -
Stsc120911g00010 258 SUPERFAMILY Cytochrome P450 13 231 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00010 258 PRINTS P450 superfamily signature 168 177 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00010 258 PRINTS P450 superfamily signature 177 188 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00010 258 PRINTS P450 superfamily signature 91 102 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120911g00010 Stsc-Chr120911 90439 92793 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120911g00010 14 236 Cytochrome P450 AT3G26310 39.576 9.70e-58 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120911g00010 - - gmx:100787727 278.1