Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120911g00009 ATGGTGTCACCACTACTCTTAGTTCTATTCCTAACTCTTCCTTTGTCCCTGTTTTTCCAGTTCTTTCAAAAACGAAAGAACAAAGCCTTTCCACCAGGTCCAAGAGGCCTTCCAATAATTGGAAATCTTCACCAATTAGATAACTCTTCCCTTTATCTTCAACTATTTGAACTCTCAAAGAAATATGGCCCTATATTCTCTCTTCAATTAGGTCTAAGAAAAGCAATTGTTATTTCATCTCCTAAATTGGCCAAAGAATTATTTAGAAACCATGATCGTGAAGTTGCTGGAAGACCAAAGTTAACTGGTCAACAAAAATTGACCTACAATGGGTTAGACATGTTCTTTTCCCAATATGATAATTATTGGAGAGAGATTAGAAAAATATGTGATACCCATGTCCTTAGTGCTAAGCGTGTGTCAAGCTTTTCCTCAATAAGAGAATTCGAGGTGAAGCAATTGGTCAAGAAAATATCAAGCAATGCTTCATCAAATAAAGTGATGAATTTGAATGAGGTGTCGATGACTCTATCAAGCACTATTATTTGTAGGATTGCGTTTGGAAGAAGGTATGAAGATGACGGAGTTGAAAGGAGTAAGTTCCACAGTTTGTTCAATGAGTTGCAAGACATGATGGTTACTTTCTTCGTTTCGGATTATATTCCTTTCATGGGTTGGATTGATAGAGTTAAGGGGCTTCATGCGCGTCTTGATAGAACTTTCAAGGAGTTTGATGAGTTCTTCCAAGAAGTTATTGAAGAACACATGGATCCTAATAGACACACCAATTCGGAGGAAGAAGACTTTGTTGATGTGTTGCTTCAATTGAAGAAACAACGTTCGTTCTCCTTTGAACTCACTTATGGTCACATCAAAGCAATATTAGTGGATATACTTGTTGCATCAACGGATACAACTGCAGCCACAATAGTTTGGGCTATGACTGCACTTATGAAAAATCCAAGAGTGATGAATAAAGTTCAAGAAGAAATTAGAAGCTTTGGCCAGCAAAAAGATTTCTTAGACGAAGATGATATTCAAAATTGCAGTTATTTTAAGGTTTTGATGAAAGAAATATTAAGATTATACCTACCAGCACCATTACTAGTGCCGAAAGAAACAAATGAAAAATGCACTTTAGGTGGTTACGAAATTCCAGCTAAGACTATAGTTTATATTAATGGATGGGCTGTTCACAGAGACTCTGAAGCTTGGAAAAATTCAGAAGAGTTTTGTCCAGAGAGATTCTTGGAAAGTTCAATTGATTTTAAGGGTCAAGATTTTGAGCTAATTCCATTTGGAGCAGGTCGTAGAATTTGTCCAGGTATGCATATGGCTGTTGTAGCACCTGATCTTATTCTTGCTAATCTTCTTTATTCCTTTGATTGGGAGCTTCCAGAAGGTGTTAAAATTGGAGATATTGATTTTGAAGCTTTGCCCGGATTGACTCAACATAAGAAGAATCCTCTTTATCTTATTGCCAAAACTAAGAAGGAATAA 1500 0.364 MVSPLLLVLFLTLPLSLFFQFFQKRKNKAFPPGPRGLPIIGNLHQLDNSSLYLQLFELSKKYGPIFSLQLGLRKAIVISSPKLAKELFRNHDREVAGRPKLTGQQKLTYNGLDMFFSQYDNYWREIRKICDTHVLSAKRVSSFSSIREFEVKQLVKKISSNASSNKVMNLNEVSMTLSSTIICRIAFGRRYEDDGVERSKFHSLFNELQDMMVTFFVSDYIPFMGWIDRVKGLHARLDRTFKEFDEFFQEVIEEHMDPNRHTNSEEEDFVDVLLQLKKQRSFSFELTYGHIKAILVDILVASTDTTAATIVWAMTALMKNPRVMNKVQEEIRSFGQQKDFLDEDDIQNCSYFKVLMKEILRLYLPAPLLVPKETNEKCTLGGYEIPAKTIVYINGWAVHRDSEAWKNSEEFCPERFLESSIDFKGQDFELIPFGAGRRICPGMHMAVVAPDLILANLLYSFDWELPEGVKIGDIDFEALPGLTQHKKNPLYLIAKTKKE 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120911g00009 499 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 433 442 IPR017972 GO:0005506|GO:0016705
Stsc120911g00009 499 Coils Coil 324 344 - -
Stsc120911g00009 499 CDD CYP71-like 61 490 - -
Stsc120911g00009 499 PANTHER CYTOCHROME P450 71B11-RELATED 13 495 - -
Stsc120911g00009 499 FunFam Cytochrome P450 83B1 18 493 - -
Stsc120911g00009 499 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00009 499 PRINTS P450 superfamily signature 431 440 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00009 499 PRINTS P450 superfamily signature 301 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00009 499 PRINTS E-class P450 group I signature 59 78 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00009 499 PRINTS E-class P450 group I signature 430 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00009 499 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00009 499 PRINTS E-class P450 group I signature 177 195 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00009 499 PRINTS E-class P450 group I signature 440 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00009 499 PRINTS E-class P450 group I signature 290 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00009 499 PRINTS E-class P450 group I signature 394 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00009 499 PRINTS E-class P450 group I signature 353 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00009 499 PRINTS E-class P450 group I signature 83 104 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00009 499 Pfam Cytochrome P450 31 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00009 499 SUPERFAMILY Cytochrome P450 31 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc120911g00009 499 Gene3D Cytochrome P450 22 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120911g00009 Stsc-Chr120911 82117 84383 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120911g00009 5 497 Cytochrome P450 AT4G31500 45.161 1.12e-161 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120911g00009 - - gmx:100801312 704.516