Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120910g00019 ATGGATTTACTAAGTGAGTGCAAGGCAAGTGAGGTGTTTGAAGGGCAAGTAGTTGTGTACAAACACATGCATGCCTACATAGATTCCATGTGTCTCAAATGGTGTCTTGAGCTTAACATAGCTGACATAATCCACAAACATGGCCAACCCATTACCCTTCATGACTTAGTCTCAACCTTGCAAGTTCCGCCGTCCAAAATCAGCGGCGTTCACCGCCTCATGCGCCACCTCGCTCACAATGGATTCTTCGACATAATAAGATTCCACGATAATAATAATGAAGAAGAAAAGGAAGCATATGCTCTCACTGTTGCTTCAAAGCTTCTTGTCAAAGGCACTCAACATTCTTTAGCTCCAATGACTAAGGGTGCTCTTGATCCCACTGTCTCAGGTGCTTACCATTTTCTGGGAAAATGGACTTTTGAAGATAATCTTACTCTATTTGATGTTTCCCTGGGAACAAATCTTTGGGAATTTTTTAGCAAAAACCCCTCACGTTTGAGTTTCTTCAATGAGTCAATGATAAGTGACTCTCAAATGTTGAAGTTGGGATTGAAAGATCATGGTGCTGTCTTTGAAGGGCTGGAATCCATTGTAGATGTTGGTGGTGGAAATGGAACTATATCTAAGATTATCAATGCCATGTTTCCCGAATTGAAATGCATAGTGTTTGATCTTCCACACGTTGTTGAGAATTTGTCAGGAAGCAACAATAATTTGAGCTTTGTTGGTGGAGACATGTTTCATTCTATTCCTCATGCTGATGCTATTTTACTTAAGATAGTTGAATGTACCTCTAGACGGAGGACGGAAGCAGCGTGCCTTGACATCGGCGTCTCAGCCACGATTTTGATGGAGTTGCAGTACGGTGATGGCGACGGAGCTGCAGTGACGAGACTTGCGAAGAGATACGCGCGACATGGCTTGGATGGAGGTGGCGACGTGGGTGCGCGAATGAGCCTGCGGCAGGTCGGAGACGAAGCCTGCGACGGTTCTCAGTGTGCGACGTGCCCTAGCAGTCTCCAAGAATTCGTTCTTTGA 1041 0.4476 MDLLSECKASEVFEGQVVVYKHMHAYIDSMCLKWCLELNIADIIHKHGQPITLHDLVSTLQVPPSKISGVHRLMRHLAHNGFFDIIRFHDNNNEEEKEAYALTVASKLLVKGTQHSLAPMTKGALDPTVSGAYHFLGKWTFEDNLTLFDVSLGTNLWEFFSKNPSRLSFFNESMISDSQMLKLGLKDHGAVFEGLESIVDVGGGNGTISKIINAMFPELKCIVFDLPHVVENLSGSNNNLSFVGGDMFHSIPHADAILLKIVECTSRRRTEAACLDIGVSATILMELQYGDGDGAAVTRLAKRYARHGLDGGGDVGARMSLRQVGDEACDGSQCATCPSSLQEFVL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120910g00019 346 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Stsc120910g00019 346 FunFam Coniferyl alcohol 9-O-methyltransferase 3 109 - -
Stsc120910g00019 346 Pfam O-methyltransferase domain 142 262 IPR001077 GO:0008171
Stsc120910g00019 346 Gene3D - 4 109 IPR036388 -
Stsc120910g00019 346 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 115 262 IPR029063 -
Stsc120910g00019 346 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 262 IPR016461 GO:0008168
Stsc120910g00019 346 PANTHER O-METHYLTRANSFERASE 19 262 IPR016461 GO:0008168
Stsc120910g00019 346 SUPERFAMILY "Winged helix" DNA-binding domain 10 112 IPR036390 -
Stsc120910g00019 346 Gene3D Vaccinia Virus protein VP39 110 275 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120910g00019 Stsc-Chr120910 125450 129165 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120910g00019 14 262 Monolignol Biosynthesis Gene Families AT5G54160 30.279 2.21e-23 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120910g00019 K22588 - gmx:100813225 321.242