Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120910g00005 ATGGCTAGGTCTGCCAAAGGCCACCAAGATGAATTGGACGACGACGACGATGACCACTTCACTGCCGACACCTCCTCTCCTCACAAAGTGAAGTTGGATGAACCAAATAGTGGGAAGAGGGTGAACCCTCATCGCTCGAAGCATTCAGAGACTGAGCAGCGCAGAAGGAGTAAGATTAATGAAAGGTTTCAGGTTCTGAGAGATCTTATTCCTCAAAATGATCAAAAAAGAGACAAGGCTTCCTTTTTATTGGAGGTTATTGAGTATATTCAGTTTCTGCAAGAAAAATTGCAAATTTATGAACAGACTTGTGAAGGGTGGAATCAAGAACCAACTAAATTAATCCCATGGAGAGGTCATGGACCTGCAGATAATAAGACAGATGGTTCTCAAGCTATGCAAAATGGATCTGCTCATGAGAAAAATGATGTCTCTCCGTTATTGCCCAAAAATGTACAGAACCCAATAGAGTCTGACTTGTCAACAACTACTATCCAAAAGGGCCACACCATCGGTTCATCTGCAGAAGCAGTTCCATTGGGCATGCAAATGAGACTGGATGTATTTGACCCAGTTGTAAGCAGTGGTATGCCAACCCAACGTCTGCATCAACCTATATCTAATGCTGATATGTCTTTACAAATCCAGCCCCAAGTTTTGCTTAGTAAACCAAGCAGGGGAAACTACATGGTTTCGGATAATATATTGATGGAACATGAAGAGCTGACAAATGAAAGTGAGACCGAAAGCATTTCAAATGCGTACTCTCAAGGAGTATTAGATACTCTTACACAAGCTCTGCAGTCATCAGGCGTGGATCTGTCTCAGACTAATGTCTCAGTGCAAATCGATGTTGGTAGAAGATCAAATCCGGGCTTTACCCCTTCTGCATCTAGCTCAAAGGTGTACGGAAACCAGTTTGTGACCAATAGAGTTAATTACTGCAGTGAAGACTCTGATCAAAGTCTAAAGAGGCTCAGAAGAGATGCAACCTAA 996 0.4257 MARSAKGHQDELDDDDDDHFTADTSSPHKVKLDEPNSGKRVNPHRSKHSETEQRRRSKINERFQVLRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLQIYEQTCEGWNQEPTKLIPWRGHGPADNKTDGSQAMQNGSAHEKNDVSPLLPKNVQNPIESDLSTTTIQKGHTIGSSAEAVPLGMQMRLDVFDPVVSSGMPTQRLHQPISNADMSLQIQPQVLLSKPSRGNYMVSDNILMEHEELTNESETESISNAYSQGVLDTLTQALQSSGVDLSQTNVSVQIDVGRRSNPGFTPSASSSKVYGNQFVTNRVNYCSEDSDQSLKRLRRDAT 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120910g00005 331 MobiDBLite consensus disorder prediction 111 147 - -
Stsc120910g00005 331 MobiDBLite consensus disorder prediction 1 59 - -
Stsc120910g00005 331 Pfam Helix-loop-helix DNA-binding domain 45 94 IPR011598 GO:0046983
Stsc120910g00005 331 SMART finulus 49 99 IPR011598 GO:0046983
Stsc120910g00005 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 119 IPR036638 GO:0046983
Stsc120910g00005 331 Coils Coil 90 110 - -
Stsc120910g00005 331 CDD bHLH_AtBIM_like 45 118 - -
Stsc120910g00005 331 Gene3D - 42 114 IPR036638 GO:0046983
Stsc120910g00005 331 MobiDBLite consensus disorder prediction 127 147 - -
Stsc120910g00005 331 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 328 IPR044295 GO:0003700|GO:0006351|GO:0046983
Stsc120910g00005 331 MobiDBLite consensus disorder prediction 21 59 - -
Stsc120910g00005 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 93 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120910g00005 Stsc-Chr120910 49277 51980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120910g00005 3 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 41.139 1.45e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc120910g00005 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120910g00005 - - ahf:112797954 465.692