Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120909g00008 ATGAGTGGTGGTGATTACTACAAGGTGTTGAAGGTGAAGCGTGAAGCAAGAGAAGAAGAAGTGAAGAAAGCATACAAGAGATTAGCAATGAAATATCATCCAGACAAGAACAAGAACAAGGATCATCGTAAGAGAGAAGATTCGGAAGCAAAATTCAAGAAGATATGCGAGGCCTATAATGTTTTGAGTGATCCAAAGAAGCGCCAGATCTATGATTTCTATGATCATTACCCTTTTAATAATAATAATTATTACTATGATTATTCTCATCATAATTTCAACAACAACAATGATTATAAGGAAGATGATGACATGAAAGTGGAGAAAGGTGGTTTGGTTGAGGGAAGGTTGGTATGTACCCTTGAGGATCTTTACAATGGTTGCACAAAGAAGGTTATGATTTCAAGAACTTTTGATCTTCAATTTCGGTCAACTTCTGTTGATGAAATCTTGAAGATAGATATCAAACCTGGTTGGAAGAAGGGCACAAAAATTACATTCCCAGGGAAAGGAAACCGAGAAGCCGGAACGGCTCCGGCCGATTTAGTCTTTGTGGTGGACGAGAAGCCGCACGCGATATTCAAAAGAGACAGACACGATCTGGTAGTCACAGAGAAGATACTACTTGTAGATGCTCTTGCTGGAAAGACTCTAAACTTGACAACTTTGGATGGAAGAGAACTCAAAATCAAAGTGACAGAGATTGTGAAACAGGGCTATGAACTCGTGATACCGAATGAAGGCATGCCGATTTCAAAGGAACCTGGCAAGAAAGGGAACCTCATAATCAAGTTTGATGTTATGTTCCCTTCAAGGCTTACCACACAACAGAAGAATGAGCTTAAGAGGATTCTAAGTGATGCTTAA 867 0.3933 MSGGDYYKVLKVKREAREEEVKKAYKRLAMKYHPDKNKNKDHRKREDSEAKFKKICEAYNVLSDPKKRQIYDFYDHYPFNNNNYYYDYSHHNFNNNNDYKEDDDMKVEKGGLVEGRLVCTLEDLYNGCTKKVMISRTFDLQFRSTSVDEILKIDIKPGWKKGTKITFPGKGNREAGTAPADLVFVVDEKPHAIFKRDRHDLVVTEKILLVDALAGKTLNLTTLDGRELKIKVTEIVKQGYELVIPNEGMPISKEPGKKGNLIIKFDVMFPSRLTTQQKNELKRILSDA 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120909g00008 288 CDD DnaJ_C 113 273 - -
Stsc120909g00008 288 SUPERFAMILY HSP40/DnaJ peptide-binding domain 194 280 IPR008971 GO:0006457|GO:0051082
Stsc120909g00008 288 SMART dnaj_3 4 67 IPR001623 -
Stsc120909g00008 288 FunFam Dnaj homolog subfamily b member 109 189 - -
Stsc120909g00008 288 CDD DnaJ 5 64 IPR001623 -
Stsc120909g00008 288 Gene3D DnaJ domain 1 99 IPR036869 -
Stsc120909g00008 288 Gene3D - 191 271 - -
Stsc120909g00008 288 PRINTS DnaJ domain signature 25 40 IPR001623 -
Stsc120909g00008 288 PRINTS DnaJ domain signature 47 67 IPR001623 -
Stsc120909g00008 288 PRINTS DnaJ domain signature 7 25 IPR001623 -
Stsc120909g00008 288 PRINTS DnaJ domain signature 67 86 IPR001623 -
Stsc120909g00008 288 FunFam DNAJ heat shock family protein 190 285 - -
Stsc120909g00008 288 Gene3D - 112 189 - -
Stsc120909g00008 288 Pfam DnaJ C terminal domain 115 270 IPR002939 -
Stsc120909g00008 288 SUPERFAMILY Chaperone J-domain 4 88 IPR036869 -
Stsc120909g00008 288 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Stsc120909g00008 288 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 285 - -
Stsc120909g00008 288 SUPERFAMILY HSP40/DnaJ peptide-binding domain 116 191 IPR008971 GO:0006457|GO:0051082
Stsc120909g00008 288 Pfam DnaJ domain 5 72 IPR001623 -
Stsc120909g00008 288 ProSiteProfiles dnaJ domain profile. 5 75 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120909g00008 Stsc-Chr120909 92149 93751 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120909g00008 6 76 C2H2 Transcription Factor Family AT1G74250 37.179 3.39e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120909g00008 K09510 - gmx:100810718 343.584