Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120909g00001 ATGAATCCCCACCTCCATCTCCATCTCCATCTCCATCTCCATCTCTCCTCCATTTCCCTCTTCTTCCTCTTCTTCTTCTTCTGCACACCAATATCTTCCCACACTTCTTGCTCATCCACAAAAACCCCATGTCCCCCATTCCCTGCCACGTCACCCTTACCCTTCCCATTCTCCTCTTCCCCAGGCTGCGGCCACCCTTCCTTCCAACTCCACTGCTCCACCCCCCACTCCTTCATCTCCATCAACAACCTCACCTTCTCCATCCTCTCCTACAAACCCAACACTTCCTCCATTATCCTCTCCCCTCACAACAACAATAATCACTCATCATGCCCTTCATCTTCCCACTTCCTTTCCATTCCCAACCAACCCGTTAACCTCTCTTCCTCCCCTTTTAGAGTCTCAGATGCTTCATGTGCCCGCCTCTTCTTCCTCCGCCCATGTTCCCCTCCAACTAACTGTAACCGCTGCTCTTGGCAATGCAACCTCATCAACAACCCCAACCACCTCCTCCCCGACTGCGGACCCATGCACCGCTCTGCTTCCGACTCCGAACCTACCTGCCAAACCGACACCTTAGGCTACCTCGATAAGATGCTTTCTTTCTCCGGGATCGAACTCCAATGGGACCAATCTCAAGACCCCTACTTCTCCAGCTGCGAACAATGCCGAGGCTTATGCGGATTCAACACTTCAGACCCTAACAACAACTTCATCTGCTTCCATTCTCAGTCCACCATCTCCCCGCCGTGGATCCCCAAGGCTAAGTTCATCAAGGCAAACAGAACCGCTGTGTTGACCCTCGCCGTTGCGTTGACCATGTTGTTGATTGTTGTCTCTATCGTTGCGTTTATTAAGAGGAATGCTGCTACTTGGAAGCAGCGCCCATTCTCGGAGGAAGATCCAACCGCCGTGTTCCTCCGCAATAACCGCAGCCTCCTCCCTCCGGTATTCACCTACGAAGAGCTTCAATCCTCCACGAACGGATTCGACCCCAAGCGCAAGATCGGCGACGGCGGCTTCGGCTCCGTCTACCTCGGCCAACTCCGTGACGGGAGATTCGTCGCCGTGAAACACCTCCACCACCACCACAGCGCCGCTGCCGGAAAAGCATTCTCATCGAAGTCGTTCTGCAACGAGATCCTCATCCTCTCTACCATAAACCACCCCAATCTCGTGAAGCTCCACGGCTACTGCAGTGACCCGAAAGGGTTGCTTCTGGTCTACGACTACGTCCCGAACGGCACCCTCGCCGACCATCTCCATGGACGCAATAACAGAAAAGCACATCTAAAATGGAAGGTAAGGTTAGAGATGGCGCTGCAAATTGCAACGGCAATGGAGTACCTTCACTTCGCGGTGGTGCCGCCGGTGGTTCATAGAGATATAACTACTTCCAACATCTTTGTGGAGAAGGATATGAGGGTGAAGGTCGGTGACTTCGGTCTCTCGAGGCTTCTGGTGTTGCAAGACAAAACGGCGTCGTCCACGGGCTCAACGACAACGACCGGGAACAACGGGTGCGTATGGACGGGTCCGCAAGGTACGCCAGGTTATTTGGACCCGGATTACCACCGGTCGTTCCGGTTAACCGAGAAGAGTGACGTGTACAGCTTTGGCGTTGTGCTTCTTGAACTGATTTCGGGTCTGAGGGCGGTGGATGCAAAGAGGGACAAAAGAGAGATGGCGCTGGCGGATATGGTGGTTTCCAGGATCCAGATGGGGCAGTTAGACGAGGTGGTGGACCCCGTTCTTGCGGCGGAGGAGAAGGCCGTAGGTGACGCTGTTGCCGCCGTGGCGGAGCTTGCGTTCCGATGCGTGGCGGCGGAGAAGGATGACCGGCCCGATTCGAAGGAGGTTGTGCAGGAGTTAAGAAGAGTGAGGGGCCGTGCTGACGTGGCAAGGGAGTGA 1911 0.5484 MNPHLHLHLHLHLHLSSISLFFLFFFFCTPISSHTSCSSTKTPCPPFPATSPLPFPFSSSPGCGHPSFQLHCSTPHSFISINNLTFSILSYKPNTSSIILSPHNNNNHSSCPSSSHFLSIPNQPVNLSSSPFRVSDASCARLFFLRPCSPPTNCNRCSWQCNLINNPNHLLPDCGPMHRSASDSEPTCQTDTLGYLDKMLSFSGIELQWDQSQDPYFSSCEQCRGLCGFNTSDPNNNFICFHSQSTISPPWIPKAKFIKANRTAVLTLAVALTMLLIVVSIVAFIKRNAATWKQRPFSEEDPTAVFLRNNRSLLPPVFTYEELQSSTNGFDPKRKIGDGGFGSVYLGQLRDGRFVAVKHLHHHHSAAAGKAFSSKSFCNEILILSTINHPNLVKLHGYCSDPKGLLLVYDYVPNGTLADHLHGRNNRKAHLKWKVRLEMALQIATAMEYLHFAVVPPVVHRDITTSNIFVEKDMRVKVGDFGLSRLLVLQDKTASSTGSTTTTGNNGCVWTGPQGTPGYLDPDYHRSFRLTEKSDVYSFGVVLLELISGLRAVDAKRDKREMALADMVVSRIQMGQLDEVVDPVLAAEEKAVGDAVAAVAELAFRCVAAEKDDRPDSKEVVQELRRVRGRADVARE 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120909g00001 636 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 18 630 IPR044652 GO:0004672
Stsc120909g00001 636 ProSitePatterns Tyrosine protein kinases specific active-site signature. 458 470 IPR008266 GO:0004672|GO:0006468
Stsc120909g00001 636 Gene3D Phosphorylase Kinase; domain 1 308 411 - -
Stsc120909g00001 636 FunFam Putative serine/threonine-protein kinase At1g18390 family 307 411 - -
Stsc120909g00001 636 Gene3D Transferase(Phosphotransferase) domain 1 412 633 - -
Stsc120909g00001 636 ProSiteProfiles Protein kinase domain profile. 330 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120909g00001 636 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Stsc120909g00001 636 Pfam Protein tyrosine and serine/threonine kinase 333 624 IPR001245 GO:0004672|GO:0006468
Stsc120909g00001 636 SUPERFAMILY Protein kinase-like (PK-like) 308 624 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120909g00001 Stsc-Chr120909 7632 10060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120909g00001 20 636 Receptor kinase-like Gene Family AT1G69910 59.528 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc120909g00001 PK_Tyr_Ser-Thr 3.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120909g00001 - - qsa:O6P43_033079 731.48