Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120908g00029 ATGTCCTTAACAGGGCGTCCTAGAGTGATCGTGAATGGAGTCCGGAGAACAAGAACTTTCCACTGTTTCTGGTGCTTTAACTGCCAACGCACAGTCAGAATACCTGCTGCATATCCGAACGGCTCCTTGTGCCCTTACTGCTTCAATAGACTCCGTTATGAGCTTGACATAACCAGGCCAACAAGGTTTCTCTTCAACAACAACAATAATTTGGAACCTTCACCAGCTTCTCAGCTATTGAATGGCCTCGCTCTCATTCTCGATCCATCTCAACGCAATCGTAACCCTAACAATCTTCATTATCGCTGGGAACAAGAACAAGAAACACAAGAAGATCAAAATGATCCACGGGCTTGGATTACTCTCAGATTCGTGAGGCCTAATAATGGTCCACAGAGGCTTATGCCTCTGCCTCCGCCTCCACCGCCGCAACCGCAAGGCAGCGATAACAGCGATTCAATTGATGAATTCATTCAAAATCTAGTCGAGAATAATAGCAACCGGCCGGGGCCGCCTCCGGCTTCATCTTCGGCGATCGCAGCGTTGCCGGTGGTGAGGCTGGCGCGAGAACAATTGGCGAGTGATCCGAACTGTGCAATATGCAAAGATGAATTTGAGGTAGATGGAGAAGTGAGGGAGTTGCCGTGCAAGCATTTCTACCATTGTGATTGCATTCTGCCATGGCTGCGGATCCATAATACCTGCCCTGTCTGCCGCTACGAGCTTCCTGTTGCTGCGGCGGCGAGCCAGAATTATCAGAACAATAATTATAATAATGAGCAGCAGGGGTTTGTTGGCTTCAACTGGATTTTGAGACATCTTGCTTCAATCAACCCCATTCGTGCTATCTTGGATTACTTGACTCATAGATATTACTCTCATCACCAACAAGATCATAACAACAATGCTCCTGCTCGTGATGATGGAGTGGCCTTGAATAATAAAATGCAAAATTGCAGTACCATTGTAATCTAG 975 0.4697 MSLTGRPRVIVNGVRRTRTFHCFWCFNCQRTVRIPAAYPNGSLCPYCFNRLRYELDITRPTRFLFNNNNNLEPSPASQLLNGLALILDPSQRNRNPNNLHYRWEQEQETQEDQNDPRAWITLRFVRPNNGPQRLMPLPPPPPPQPQGSDNSDSIDEFIQNLVENNSNRPGPPPASSSAIAALPVVRLAREQLASDPNCAICKDEFEVDGEVRELPCKHFYHCDCILPWLRIHNTCPVCRYELPVAAAASQNYQNNNYNNEQQGFVGFNWILRHLASINPIRAILDYLTHRYYSHHQQDHNNNAPARDDGVALNNKMQNCSTIVI 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120908g00029 324 Pfam Ring finger domain 197 239 IPR001841 -
Stsc120908g00029 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 101 243 - -
Stsc120908g00029 324 MobiDBLite consensus disorder prediction 132 147 - -
Stsc120908g00029 324 SUPERFAMILY RING/U-box 179 245 - -
Stsc120908g00029 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 245 IPR013083 -
Stsc120908g00029 324 CDD RING-H2_RNF126-like 197 239 - -
Stsc120908g00029 324 SMART ring_2 198 238 IPR001841 -
Stsc120908g00029 324 ProSiteProfiles Zinc finger RING-type profile. 198 239 IPR001841 -
Stsc120908g00029 324 MobiDBLite consensus disorder prediction 130 153 - -
Stsc120908g00029 324 FunFam E3 ubiquitin-protein ligase RING1-like 160 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120908g00029 Stsc-Chr120908 121535 122905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120908g00029 1 287 C3H Transcription Factor Family AT1G68180 33.564 1.78e-42 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120908g00029 K11982 - gmx:100793656 299.671