Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120908g00012 ATGAGAACTGATCTGTCTTTGCACATAGATGCCAAGAAAGAAAAAGAAGAAGATGATGTTGATGTTGAAGCTGGAGAATTAGAAGAAGATGTAGTTGTGATGACGGTGACATCTCCAACAATATCCTTGCAAGAGAACTACAAAACTAGCAGAGAGGAGGAGGAGGAGTTGAGTGTGTTACAAATGGAGATGGATCGCGTAAAAAAGGAGAATAAAGCTCTAAAGAAAGTGGTGGAACAAACCATGAAAGACTACCATGATCTCCAAATGAAATTTTCCGTCGTTCAAGACAAGAATAATAACAATAAGGATCTTGAAATTTCTGTCCAAAGAGGATCACCGACAATTCCTGACGATGAGATAATCTTTGATAACAAAACTGATGAACCTTGTGGATCTCCTCCTCATCATCACCATGATGAACTGAGCTTGTCACTCAAGTTGAATACATCATGGAGGAGGATTCATCAACAAGAGCAGAACACAGCAGATAATACTAATAATAAAGAAGAACTAATTTCAACAAGTTTTGCATCATCATCATCATCACTTCAGAACAAGTTAATAACAAGAGGAACACATGATGATCATCATCAATTATCTGCTGCTATCACTACTACTACTCATCATCATCATCATTCTGCAGCTTCCACTCCAAATAGAAAGCCTAGGGTTTCTGTTAGAGCCAGATGCGAGGAAGCCAAAATGAATGATGGGTGCCAATGGAGAAAATACGGGCAAAAAATAGCAAAAGGGAATCCATGCCCACGAGCTTATTATCGTTGCACAGTAGCCCCAGGTTGCCCAGTTAGGAAACAGGTGCAAAGATGCATGGATGACATGTCAATACTGATAACAACATATGAAGGAACACATAATCATCCACTTCCAGTGGGTGCAACTGCCATGGTGGCCTCAACAGCTTCTTCTGCTAATAATTCTTTTACTCTTTCTCATTCACAACCTCCTCCTCAATTTCCATGGATCATCAGCAAAAATAATGTTATAAATGGAAGCACACAAGAGCCACGCATCCCATTATTAGGTAATAATAATAATAATAATGTGTCGGCAATTACATCAGATCCTAAGTTCAGGGTTGCTGTTGCAGCAGCCATAACCACTCTCTTCACTGATAATAATAAAGAAAGCTATCATCATCATCATCATCATGGTGGTAGCGGAGGTACCTCTAACAACAACACCAATAACTGGATCATAGAATCTCTCTCCAGAAACAACGTTAAGCCCAATTGA 1257 0.3938 MRTDLSLHIDAKKEKEEDDVDVEAGELEEDVVVMTVTSPTISLQENYKTSREEEEELSVLQMEMDRVKKENKALKKVVEQTMKDYHDLQMKFSVVQDKNNNNKDLEISVQRGSPTIPDDEIIFDNKTDEPCGSPPHHHHDELSLSLKLNTSWRRIHQQEQNTADNTNNKEELISTSFASSSSSLQNKLITRGTHDDHHQLSAAITTTTHHHHHSAASTPNRKPRVSVRARCEEAKMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCMDDMSILITTYEGTHNHPLPVGATAMVASTASSANNSFTLSHSQPPPQFPWIISKNNVINGSTQEPRIPLLGNNNNNNVSAITSDPKFRVAVAAAITTLFTDNNKESYHHHHHHGGSGGTSNNNTNNWIIESLSRNNVKPN 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120908g00012 418 FunFam probable WRKY transcription factor 31 221 298 - -
Stsc120908g00012 418 MobiDBLite consensus disorder prediction 1 22 - -
Stsc120908g00012 418 MobiDBLite consensus disorder prediction 384 418 - -
Stsc120908g00012 418 ProSiteProfiles WRKY domain profile. 231 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc120908g00012 418 Gene3D WRKY domain 221 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc120908g00012 418 SUPERFAMILY WRKY DNA-binding domain 230 297 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc120908g00012 418 MobiDBLite consensus disorder prediction 1 19 - -
Stsc120908g00012 418 MobiDBLite consensus disorder prediction 394 418 - -
Stsc120908g00012 418 Coils Coil 50 84 - -
Stsc120908g00012 418 Pfam WRKY DNA -binding domain 237 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc120908g00012 418 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 21 388 IPR044810 GO:0003700
Stsc120908g00012 418 SMART WRKY_cls 236 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc120908g00012 418 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120908g00012 Stsc-Chr120908 50768 52546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120908g00012 60 319 WRKY Transcription Factor Family AT1G68150 47.925 1.87e-67 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc120908g00012 WRKY 1.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120908g00012 - - aip:107621791 412.149