Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120908g00002 ATGAGAAGAATGTCATTCCGAAGCATAGTTCGGGATGTGAGGGATAGTATTGGGAGCTTATCTAGGCGCAGTTTTGATGTGAGGCTGACTGGCCATCACAGAGGAAAATCTCATGGATCAGTACAGGATTTGCATGACCAGCCACTAGTAATTCAAAATAGTCGCTGGGCAAGCTTACCTCCGGAGCTACTCTATGATGTCATTAGACGGCTGGAGGAGAGTGAGAACACATGGCCTGCTCGAAAGCATGTTGTTGCATGTTCTGCAGTTTGCCAATCTTGGAGGAGGATGTGTAAAGAAATTGTCAAGAGCCCTGAGTTCTGTGGCAAACTTACATTCCCTGTGTCCCTGAAACAGCCTGGGCCACGAGATGGAATTATTCAATGTTTCATCAAAAGAGATAAATCTAATTCAACATATCACCTATTCCTCTGTCTCAGCCCTGCTTTGTTAGTTGAAAATGGAAAATTCCTCCTTTCTGCTAAGAGAGTACGTAGAACTACTTACACAGAGTATGTTATTTCTATGGATGCTGACAACATCTCTAGATCAAGTAACACATACATTGGAAAGCTGCGATCAAACTTTCTTGGGACGAAATTCATCATATTTGATACACAGCCTCCATATTCCTCTGCACATATATGCCCTCCTGGAGGAACTGGAAGAACAAGCCGCAGATTTTATTCTAAAAAGGTCTCTCCGAAGGTTCCTTCTGGAAGCTACAACATAGCTCAGGTAACATATGAATTAAATGTCCTTGGAACTCGAGGCCCAAGGAAGATGCACTGCATCATGCATTCAATACCGGCCTCAGCACTTGACGTCGGCGGCACTGTTCCTGGCCAGCCGGAGCTTCTCCCACGTTCCCTGGAGGACTCGTTTCGGAGCATCTCATTTTCCAAGTCTCTAGATCACTCTATAGAGTTCAGCAGCTCACGGTTTTCAGATATTGGTGGATCTGTTAACAACGAGGACGATGACAGCAAGTTGAGACCCTTGGTTCTGAAAAACAAGCCTCCAAGATGGCATGAACAATTACAATGTTGGTGCCTCAATTTCCGAGGAAGGGTAACAGTTGCATCTGTTAAGAACTTTCAGTTGATTGCCGCCACCCAGCCTGCTGCCGGTGCACCCACGCCATCTCAACCAACTCCGCCGGATCACGACAAGATTATCCTGCAGTTCGGCAAAGTTGGGAAAGATATGTTCACCATGGATTACCGGTATCCCCTATCTGCATTCCAAGCTTTTGCAATATGCTTGAGCAGCTTTGACACCAAATTGGCCTGTGAATAG 1299 0.4565 MRRMSFRSIVRDVRDSIGSLSRRSFDVRLTGHHRGKSHGSVQDLHDQPLVIQNSRWASLPPELLYDVIRRLEESENTWPARKHVVACSAVCQSWRRMCKEIVKSPEFCGKLTFPVSLKQPGPRDGIIQCFIKRDKSNSTYHLFLCLSPALLVENGKFLLSAKRVRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIFDTQPPYSSAHICPPGGTGRTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPASALDVGGTVPGQPELLPRSLEDSFRSISFSKSLDHSIEFSSSRFSDIGGSVNNEDDDSKLRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPTPPDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120908g00002 432 CDD F-box_AtTLP-like 56 100 - -
Stsc120908g00002 432 FunFam Tubby-like F-box protein 113 432 - -
Stsc120908g00002 432 ProSitePatterns Tub family signature 1. 354 367 IPR018066 -
Stsc120908g00002 432 PANTHER TUBBY-RELATED 33 430 - -
Stsc120908g00002 432 PRINTS Tubby superfamily signature 172 188 IPR000007 -
Stsc120908g00002 432 PRINTS Tubby superfamily signature 188 212 IPR000007 -
Stsc120908g00002 432 PRINTS Tubby superfamily signature 354 370 IPR000007 -
Stsc120908g00002 432 PRINTS Tubby superfamily signature 241 268 IPR000007 -
Stsc120908g00002 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Stsc120908g00002 432 PRINTS Tubby superfamily signature 336 353 IPR000007 -
Stsc120908g00002 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Stsc120908g00002 432 Gene3D - 51 103 - -
Stsc120908g00002 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Stsc120908g00002 432 SUPERFAMILY Tubby C-terminal domain-like 105 432 IPR025659 -
Stsc120908g00002 432 Pfam F-box domain 56 103 IPR001810 GO:0005515
Stsc120908g00002 432 Pfam Tub family 117 427 IPR000007 -
Stsc120908g00002 432 SUPERFAMILY F-box domain 52 100 IPR036047 GO:0005515
Stsc120908g00002 432 Gene3D Tubby Protein; Chain A 115 426 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120908g00002 Stsc-Chr120908 2673 6180 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120908g00002 4 432 TUB Transcription Factor Family AT1G76900 70.259 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Stsc120908g00002 Tub 4.1e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120908g00002 K19600 - gmx:100814578 801.586