Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120907g00015 ATGATTGGTCCTCGGGGAAGTACGAACGATGGTCATCCAGTGCTAGTTCTGGGTCGGTCGGGATTGGCTATGATAACCGATCGGATGCTCGATAGACAAGTGGTAAAATCAGAATCTGCTACCATTAAGATTCCAGAGTTGGATTTTGAGATTCCACCAGAGGCTCAGCGCGGTAGTCTTTCAACGGTGGAAGGCATACTAATGCGGGCTGCTGATGAGCTTCAGGCCCTTCAAGAGGAGCGCAGGAAAGTGTCTCCAGAGACAGCTGAAGCAATTGATCAGTTCTTGGTGAAATTGCGAGCCTGTGCTACTGGGGAATCAGCCTTCACATTTATTCTTGATGATCCTGCTGGAAACAGCTTTGTTGAAAACCCGTTTGCGCCATCATCTGATCCGTCATTGACTATCAAGTTTTATGACCGAACACCTGAGCAGCAAGCATTGTTGGGATATCTTGCTGATTCTTCACAGATTGAAGGGACTCGCAATGAAGCACGAGCAGGGGAAAATGCTGTGGTTACTAATCAAGTGAGGAGAGAGCCACATGGATCTGTAGGGGCAACTGCTGGTCATCGAGCCATTGCACAGAGTAATAGTGCAGAAATTGCGGAAGCCTTATTTCGATATACTGCACCGGAAGAGGTGATGACTTTCCCATCAACTTGTGGTGCTTGTGCCAGTATGAGTGAGACTAGAATGTTTGTCACCAATATTCCATACTTTCAAGAAGTAATTGTAATGGCATCCACATGTGACTCTTGTGGCTACCGCAACTCTGAGTTAAAACCTGGTGGACCAATTTCTGAAAAAGGCAAAAGGATTTCGCTTCATGTGGAAAATGTTAATGACTTAAGTCGCGATGTAATCAAGTCTGATACTGCAAGTGTAAAAATTCCTGAACTTGAATTGGAGTTGGCAAGTGGCACCCTTGGGGGATTGGTTTCAACCGTTGAAGGTTTGATTACAAAAATTAACGAAAGCCTTCAGAGGGTCCATGGATTTACTTTCGGTGATAGTTTGGATGAAAATAGAAAAACCAAGTGGCTGGACTTCAAAGAAAAGCTAGACAAGCTTCTTAGCTTGGAAAAACCTTGGACTTTAATTCTTGATGATGCACTAGCCAATTCCTTTATAGCACCTGCAACTGATGATTTAAAACAAGACAATCAATTAACATTTGAGGAGTATGAGAGGTCATGGGAGCAAAATGAAGAATTAGGCTTGAATGATATGGACACTTCTGCTGCCGATGTTGCTTACGAATCAGCAAATAATACTAAAGTTGAAAGAACACTGTAG 1299 0.4349 MIGPRGSTNDGHPVLVLGRSGLAMITDRMLDRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILMRAADELQALQEERRKVSPETAEAIDQFLVKLRACATGESAFTFILDDPAGNSFVENPFAPSSDPSLTIKFYDRTPEQQALLGYLADSSQIEGTRNEARAGENAVVTNQVRREPHGSVGATAGHRAIAQSNSAEIAEALFRYTAPEEVMTFPSTCGACASMSETRMFVTNIPYFQEVIVMASTCDSCGYRNSELKPGGPISEKGKRISLHVENVNDLSRDVIKSDTASVKIPELELELASGTLGGLVSTVEGLITKINESLQRVHGFTFGDSLDENRKTKWLDFKEKLDKLLSLEKPWTLILDDALANSFIAPATDDLKQDNQLTFEEYERSWEQNEELGLNDMDTSAADVAYESANNTKVERTL 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120907g00015 432 SMART zpr1 8 124 IPR004457 GO:0008270
Stsc120907g00015 432 SMART zpr1 220 380 IPR004457 GO:0008270
Stsc120907g00015 432 FunFam Zinc finger protein ZPR1 266 408 - -
Stsc120907g00015 432 Gene3D ZPR1, zinc finger domain 210 265 IPR042452 -
Stsc120907g00015 432 NCBIfam ZPR1 zinc finger domain 221 412 IPR004457 GO:0008270
Stsc120907g00015 432 FunFam zinc finger protein ZPR1 19 151 - -
Stsc120907g00015 432 Gene3D ZPR1, A/B domain 266 408 IPR042451 -
Stsc120907g00015 432 Gene3D ZPR1, A/B domain 19 151 IPR042451 -
Stsc120907g00015 432 PANTHER ZINC FINGER PROTEIN ZPR1 26 422 IPR040141 -
Stsc120907g00015 432 Pfam ZPR1 zinc-finger domain 26 123 IPR004457 GO:0008270
Stsc120907g00015 432 Pfam ZPR1 zinc-finger domain 220 378 IPR004457 GO:0008270
Stsc120907g00015 432 Coils Coil 60 80 - -
Stsc120907g00015 432 FunFam Zinc finger protein ZPR1 211 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120907g00015 Stsc-Chr120907 82217 90816 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120907g00015 28 428 C2H2 Transcription Factor Family AT5G22480 75.312 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120907g00015 K06874 - gmx:100798741 681.019