Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120906g00010 ATGATTGATGATCAGAAGTTTGAGAACGAATCGTCTTACTATAGTGATTATTCATATGCGGAGAGTATGTCAGGGGTAGATGAGTCTTTTTCTGATTATCCTTCAACAAACAATGGGAGATTATTAGAAAAGAAGAAAATGAAGAAAGTGAGGTCCATCAGTAGCTATCATAGGTCGTCAAACATGGAATCATCCCCCAGCAGAAGAGTAAGATCTCAACCTGTTAGCGCAAGAACTTCAGGAATATCAACCCCAGTTTATGATTCAGATGCAAACGAGGGTTTTGAGAGTTCATCACCAACATTCCTAAGGCAGAAATTATCAAGTTTGAAACAAAAGAGAAGCTCACCTAGCGTAAAAGAATTGAGGAGAAAATTTGAAACTAATTCAAAGTTGCATAACGCCACATGTTCATCAACACTCAAGCTCGCTCATTTCACCGCCGATGGCAACGACCTTCCACATGATCATCATCATCATCATCATGGATCTAAATCTAATAAAGAGTTATCAGTTATGAAGATGTGTTCATATGCTTACTGCAATGCTCATGTCTGGTATCATGAAGAATTGCCGCCGCCGCCGTGCGCATCGCGCCGCCGTCAATTGAAGAGTCAGAGCCATACCAGAATCAAATCAGATAGTCAACGACCTGTTATCAGGAAATCAACTCACAGAAGCAGAGTTTCCAACAATGAGGATTCAGTGAATGAAATGACAACCGATTATTGCGAAACTGAAACCGATTTGGATATTGATGATGGTAAATATAAAAAGACGTACTTAGTGCCAAAAGCATTTGATAAGATTCTTGCGCAGCAAGAAACTGAAGCAGAGGTCTCAGATTGTGATAGTAATAAATTAAAATCTGAAGGGACTTCCGCCTTGAATGAAGGCATCGAAGATAATAATAATAGTAAGAGTGGTGGAGAAATAAGAAAAGATGAAACTTGTGTCGCAAGCAAACCGGATAAGAAATTACGAAAAGGATGGAACGATCTGAAAAAGTTGATCCTCTTTAAGAGGTTTGTGAAGGCATTGGAAGAGGCAAGAGAATTCAACCGGCGACGAAGACTTAGAGAGAGACCTCTGTCGCGTACTTCGAGTCTAGGAACAGAAAGAGCTAATATCGAAAGAAACATAACAGAAGAAGAAAAGAATGCTGAGGAGTGGATGATTGATTATGCACTTCAGAAGGCAATTGCTGAACCTCCTCGTACTGCTACTAAACGAAAGCCGAGAGTGGCACTTCTTGTAGAAGCTTTCGAAACGGTTGTGCCGTTAGGACAGTTAGATGTGCATAATCGCAGGCGTTCACTTTCAAATCGAGCAAGATCAACTAAATAG 1347 0.4031 MIDDQKFENESSYYSDYSYAESMSGVDESFSDYPSTNNGRLLEKKKMKKVRSISSYHRSSNMESSPSRRVRSQPVSARTSGISTPVYDSDANEGFESSSPTFLRQKLSSLKQKRSSPSVKELRRKFETNSKLHNATCSSTLKLAHFTADGNDLPHDHHHHHHGSKSNKELSVMKMCSYAYCNAHVWYHEELPPPPCASRRRQLKSQSHTRIKSDSQRPVIRKSTHRSRVSNNEDSVNEMTTDYCETETDLDIDDGKYKKTYLVPKAFDKILAQQETEAEVSDCDSNKLKSEGTSALNEGIEDNNNSKSGGEIRKDETCVASKPDKKLRKGWNDLKKLILFKRFVKALEEAREFNRRRRLRERPLSRTSSLGTERANIERNITEEEKNAEEWMIDYALQKAIAEPPRTATKRKPRVALLVEAFETVVPLGQLDVHNRRRSLSNRARSTK 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120906g00010 448 Pfam Plant calmodulin-binding domain 326 427 IPR012417 GO:0005516
Stsc120906g00010 448 SMART CaM_binding_2 307 427 IPR012417 GO:0005516
Stsc120906g00010 448 MobiDBLite consensus disorder prediction 196 240 - -
Stsc120906g00010 448 MobiDBLite consensus disorder prediction 26 100 - -
Stsc120906g00010 448 MobiDBLite consensus disorder prediction 54 100 - -
Stsc120906g00010 448 Coils Coil 374 394 - -
Stsc120906g00010 448 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 29 238 IPR044681 GO:0005516
Stsc120906g00010 448 MobiDBLite consensus disorder prediction 207 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120906g00010 Stsc-Chr120906 124997 127802 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120906g00010 331 429 Calmodulin-binding Proteins AT5G04020 40.404 2.82e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120906g00010 - - aip:110268874 461.07