Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120905g00002 ATGAGTCAGTGTGTTCCCAGCTGGGAGGTGGAGGACGCCAATTCACCGCCCTCAAGACCCTCTCACCGCTTCAACTCCAACTCAACTATCCCTGACGTTCCCATGTTAGACTATGAAGTAGCAGAGTTAACATGGGAAAATGGACAACTATCAATGCATGGCTTAGGGTTCCCGCGAGTGCCGACTAAATCCTCGGCGGTTTCAACAACCACCAACAACACAACGCCTTCAAAGTACACGTGGGAAAAGCCTCGTGCAAGTGGCACACTGGAATCCATAGTAAACCAAGCAACTACCATACCCCCAAACGTCAAATCAACAACGTTCCACGGAAACAGCGGCGGCGGTGGCAGTGATTGTAATAATAATACTGGCGGTGATGGTGGTGGCAGCGGAGGCAGCAGTGTTTACGAAAATCTATTAGTTCCATGGTTTGATCCCCACCGTGTTGCTGCCACCGTTATTGCGGCCGGAACCCCAAACACAATGACCATGGACGCGTTGGTGCCATGCTCGGAGCAGAGAACTCCGCCGCAAGTTATGGACTCCATCCCCCGAGGGCTTGGAGCGTGCATGGCGGGTTCCTCAGTACGTATTGGCTTGGGTGATGGTGGCGGTGCCAAGGATGATGGCGCGCTTGATAAGCGCGCCAGGAGGGGACGTGTGCCGGCGGCATCGGGAGTGTCGGCACATGATGAGATGAGTAGGAGGGATCAGAGTGTGAGTGCGGGCGCCACCTTTGGGAGGGAGAGCCAGCACTTGACACTTGACACGTGCGACAGAGAGTTCGGATTGGGTTACACTTCCACGTCGATGGGATCTCCGGAAAATACAATAAGCTCCGGAAAGCAGTGCACCAAGACCAACACCATTGATGACCATGATTCTGTTTGCCACAGTAGATCAATGAGAGATGAGGGAGATGAGGAGGAGAAAAAGAAGGAAACTGGTAAATCTTCTCTGTCCACTAAAAGGAGTAGAGCCGCAGCTATACACAACCAATCAGAAAGGAAAAGGAGGGATAAGATAAACCAAAGGATGAAGACATTGCAAAAGCTGGTCCCAAATTCCAGCAAGACGGACAAAGCTTCAATGTTGGATGAAGTGATAGAATATCTCAAACAGTTGCAAGCACAAGTGCAGATGGTGAACAGGATCAACATGTCATCCATGATGCTTCCCATGACCATGCAACAACAGCTTCAAATGTCAATGATGGCTCCCATGGGCATGGGAATGGGGATGGGCATGGGCATGGGCATGCCTGGGATGGGAATGGGGATGGATATGAACACACTTAGTCGCACTAATATACCTCCTGGAATCCCTCCGGTCCTCCACCCATCCGCATTCATGCCTATGCCTTCCTGGGATGCTGCTGCTACCGCAACTGCTGCTGCCGCTGCGGCTGCTGCGGCCGGAGGTGGTGCTGACCGACTTCAAGGACCTCTACCAACCTCAATGCCTGATCATTTATCAACATTTTTCGGATGTCCTCCATCACAGCCCATGAGCTTGGATGCGTACAGTAGGATTGCTGCCATGTATCAGCAACTTCAGCACCAACAACCCCCAGCATCAGGTTCCAATAAGAGCTGA 1599 0.5191 MSQCVPSWEVEDANSPPSRPSHRFNSNSTIPDVPMLDYEVAELTWENGQLSMHGLGFPRVPTKSSAVSTTTNNTTPSKYTWEKPRASGTLESIVNQATTIPPNVKSTTFHGNSGGGGSDCNNNTGGDGGGSGGSSVYENLLVPWFDPHRVAATVIAAGTPNTMTMDALVPCSEQRTPPQVMDSIPRGLGACMAGSSVRIGLGDGGGAKDDGALDKRARRGRVPAASGVSAHDEMSRRDQSVSAGATFGRESQHLTLDTCDREFGLGYTSTSMGSPENTISSGKQCTKTNTIDDHDSVCHSRSMRDEGDEEEKKKETGKSSLSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMVNRINMSSMMLPMTMQQQLQMSMMAPMGMGMGMGMGMGMPGMGMGMDMNTLSRTNIPPGIPPVLHPSAFMPMPSWDAAATATAAAAAAAAAGGGADRLQGPLPTSMPDHLSTFFGCPPSQPMSLDAYSRIAAMYQQLQHQQPPASGSNKS 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120905g00002 532 Pfam Helix-loop-helix DNA-binding domain 332 377 IPR011598 GO:0046983
Stsc120905g00002 532 MobiDBLite consensus disorder prediction 268 342 - -
Stsc120905g00002 532 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 40 527 IPR031066 -
Stsc120905g00002 532 MobiDBLite consensus disorder prediction 1 29 - -
Stsc120905g00002 532 MobiDBLite consensus disorder prediction 288 321 - -
Stsc120905g00002 532 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 325 389 IPR036638 GO:0046983
Stsc120905g00002 532 Gene3D - 322 387 IPR036638 GO:0046983
Stsc120905g00002 532 CDD bHLH_AtPIF_like 327 388 IPR047265 -
Stsc120905g00002 532 MobiDBLite consensus disorder prediction 101 131 - -
Stsc120905g00002 532 MobiDBLite consensus disorder prediction 268 287 - -
Stsc120905g00002 532 MobiDBLite consensus disorder prediction 202 249 - -
Stsc120905g00002 532 SMART finulus 333 382 IPR011598 GO:0046983
Stsc120905g00002 532 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 327 376 IPR011598 GO:0046983
Stsc120905g00002 532 MobiDBLite consensus disorder prediction 101 130 - -
Stsc120905g00002 532 FunFam transcription factor UNE10 isoform X1 322 387 - -
Stsc120905g00002 532 Coils Coil 333 353 - -
Stsc120905g00002 532 MobiDBLite consensus disorder prediction 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120905g00002 Stsc-Chr120905 15067 23175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120905g00002 1 510 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 42.218 8.45e-86 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc120905g00002 HLH 8.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120905g00002 - - ahf:112697399 701.049