Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120904g00025 ATGCGAGGGAACAGTTATAACTGTATTCCTATAACACCCAGATCAAGATTAGAGAGGCTATTGAGGGAAAGAGAGCTAAGAAAGTCGAACAAGTTTTTTGAGGAGGCAAGAGATGGTGACATTTATGGTGACTCGTTAACTGAGAGTGACAGTTTTAATTCTCTCAATGAGGAAGACATTTCTGAAGCACTTGCTGTTGCAAGAGTTTTTTCAGACAGAAATCAATGGCCGGATGAGCGGCCACGCAAGCAACGGTTGTTGGTGGTAGCTAATAGGTTGCCTGTATCAGCTGTTAGGGAGGGTGTAAAGGAGTTTGAAACTAGATGGATTGGGTGGGCTGGTGTGAATGTATCTGATGGTGTTGGGCAGAAAGCATTGACTAAAGCCTTAGCTGAAATGAGATGCATTCCAGTATTTCTTGATGAGCATATTGTGAATCAGTACTATAACGGTTACTGCAACAACATCTTATGGCCTCTTTTTCATTATCTTGGCCTTCCACAAGAAGACAGACTTGCTACCACTCGTAGCTTCCAATCTCAATTTGATGCATATAAGAAGGCAAACCAGATGTTTGCTGATGTAGTAAATAAGTACTATAAGGAAGGAGATGTTGTTTGGTGCCATGATTACCATCTAATGTTCCTTCCAAAATGTTTAAAAGAATACAATGACAAAATGAAAGTTGGCTGGTTTCTTCATACTCCTTTTCCTTCCTCAGAAATACATAGGACTTTGCCATCAAGAACAGAGCTTTTGAGATCTGTACTTGCTGCTGACTTGGTAGGATTCCATACTTATGATTATGCCAGACATTTTGTAAGTGCTTGTACTCGCATTCTTGGGCTTGAAGGTACACCTGAAGGAGTAGAAGATCAAGGGAAGCTAACTCGTGTGGCTGCGTTTCCTATTGGGATTGATTCTGATCGGTTTATTCGAGCCCTGGAACTCCCTGAAGTTCAGGAGCACATGAAAGAACTGAAAGAAAGATTTGCAGGCAGAAAGGTAATGTTGGGCGTTGATCGTCTTGATATGATAAAAGGAATTCCCCAAAAGATATTGGCATTTGAAAAGTTCCTTGAGGAGAACCCACGCTGGCGTGATAAAGTTGTCTTGCTGCAAATTGCTGTACCAACTAGGACTGATGTTCCTGAATATCAAAAGCTTACAAGTCAGGTGCACGAGATTGTTGGCCGCATCAATGGAAGATTTGGAACCCTTACTGCTGTTCCAATACACCATCTTGATCGGTCACTTGACTTTTATGCATTATGTGCACTCTATGCTGTTACTGATGTGGCGCTTGTTACATCTCTAAGGGATGGAATGAATCTTGTCAGCTATGAATTTGTCGCATGTCAAGCTTCCAAGAAGGGGGTTCTAATTTTAAGTGAGTTTGCAGGAGCTGCACAGTCTCTTGGTGCTGGTGCTATCTTGGTAAATCCATGGAATGTGACAGAGGTTGCTGCTTCTATTTGTTATGCATTGGATATGCCAGCTGATGAAAGAGAAAAACGGCATCTAGTTAACTTCAAGCATGTGACAACACACACTTCACAAGAATGGGCAGCAACTTTTGTGAGTGAACTGAATGATACCATTGTCGAAGCCCAGCTTAGGACAAGACAAGTTCCCCCATTACTTCCCAAGGAAGTGGCAGTTGATTGTTATTCAAAATCAAATAACCGATTAATTATACTGGGTTTCAATGCCACTTTGACAGAACCAGTGGATGCCCTTGGAAGGGGTGGTCAAATTAGAGAAATGGAACTTAGATTGCATCCAAATATAAAGAAACCTTTAAAGAAGTTATCTGATGATCCAAAGACAACAATTGTTGTTCTGAGTGGGAGTGATCGAACTGTCCTGGACAAAAATTTCAGTGAATACAATCTATGGTTAGCTGCAGAAAATGGGATGTTTCTGCGGCACACTTCCGGTGAATGGATGACAACCATGCCTGAAAATTTACACATGGATTGGGTTGATAGCGTAAAGCATGTTTTTGAGTATTTTACGGAAAGAACACCACGGTCTCATTTTGAGCTTCGTGAAACTTCAGTTGTATGGAATTACAAGTATGCAGATATTGAGTTTGGAAGGATTCAAGCAAGAGATCTGCTTCAGCATCTTTGGACAGGACCAATATCAAACGCATCTCTTGATGTTGTCCAAGGTGGTCGATCTGTTGAGGTCAGGGCAATTGGTGTCTCAAAGGGAGCAGCTATTGATCGCATCTTAGGAGAGATTGTTCATGACAAAGGAATGAAGGCTCCAATTGATTATGTCTTATGCATCGGGCACTTTCTTCCAAAGGATGAAGATGTCTATAAATTCTTTGAACCAGAACTTCCTTGTGAATCATCAGCATTAGTAAGAGCTATGCCATCCAATTCTTTAAGGTCATCACCTCAGCAAAAATTTCCACTCAGCAAAAATGGGTCTAAGGCAGGTCGCTATAAGAAGCAACGTTCAATGTCAACCATAGAAAAGTTAGAAATCGATCATGCAAGTGGCGATCCATGGATACCAACATATCATGATAGAGTATCGCTGCATGAGGGCTCTTCGGTGCTCGATCTTCAAGGCGATAATTACTTCTCTTGTGCTGTTGCACGCAAGAGATCAAGTGCACGCTACTTACTTAAAACCTCAAATGATGTTGTCAATCTCTTAAGTAACATGGCAGATCATTCATCAACACGATCAACTTAG 2715 0.4136 MRGNSYNCIPITPRSRLERLLRERELRKSNKFFEEARDGDIYGDSLTESDSFNSLNEEDISEALAVARVFSDRNQWPDERPRKQRLLVVANRLPVSAVREGVKEFETRWIGWAGVNVSDGVGQKALTKALAEMRCIPVFLDEHIVNQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANQMFADVVNKYYKEGDVVWCHDYHLMFLPKCLKEYNDKMKVGWFLHTPFPSSEIHRTLPSRTELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSDRFIRALELPEVQEHMKELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPRWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFYALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNVTEVAASICYALDMPADEREKRHLVNFKHVTTHTSQEWAATFVSELNDTIVEAQLRTRQVPPLLPKEVAVDCYSKSNNRLIILGFNATLTEPVDALGRGGQIREMELRLHPNIKKPLKKLSDDPKTTIVVLSGSDRTVLDKNFSEYNLWLAAENGMFLRHTSGEWMTTMPENLHMDWVDSVKHVFEYFTERTPRSHFELRETSVVWNYKYADIEFGRIQARDLLQHLWTGPISNASLDVVQGGRSVEVRAIGVSKGAAIDRILGEIVHDKGMKAPIDYVLCIGHFLPKDEDVYKFFEPELPCESSALVRAMPSNSLRSSPQQKFPLSKNGSKAGRYKKQRSMSTIEKLEIDHASGDPWIPTYHDRVSLHEGSSVLDLQGDNYFSCAVARKRSSARYLLKTSNDVVNLLSNMADHSSTRST 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120904g00025 904 CDD GT20_TPS 85 531 IPR001830 GO:0003824|GO:0005992
Stsc120904g00025 904 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 313 515 - -
Stsc120904g00025 904 SUPERFAMILY HAD-like 563 751 IPR036412 -
Stsc120904g00025 904 Pfam Trehalose-phosphatase 588 797 IPR003337 GO:0003824|GO:0005992
Stsc120904g00025 904 MobiDBLite consensus disorder prediction 799 819 - -
Stsc120904g00025 904 FunFam Alpha,alpha-trehalose-phosphate synthase 589 660 - -
Stsc120904g00025 904 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 655 735 - -
Stsc120904g00025 904 CDD HAD_TPP 564 783 - -
Stsc120904g00025 904 Gene3D Glycogen Phosphorylase B; 313 515 - -
Stsc120904g00025 904 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 86 531 IPR012766 GO:0003825|GO:0005992
Stsc120904g00025 904 Gene3D Glycogen Phosphorylase B; 77 312 - -
Stsc120904g00025 904 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 99 312 - -
Stsc120904g00025 904 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 84 534 - -
Stsc120904g00025 904 Gene3D - 655 735 - -
Stsc120904g00025 904 Gene3D - 589 749 IPR023214 -
Stsc120904g00025 904 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 79 896 IPR001830 GO:0003824|GO:0005992
Stsc120904g00025 904 Pfam Glycosyltransferase family 20 98 531 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120904g00025 Stsc-Chr120904 127278 133851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120904g00025 1 901 Trehalose Biosynthesis Gene Families AT1G78580 72.756 0.0 1352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120904g00025 K16055 - gmx:100816642 1506.12