Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120904g00023 ATGTCAGACATCACTTGCTCTCAACAGCAACAGAGGAAGAACAACATGGGAAGAGGGAAGATAGAGATAAAGAGGATAGAGAACACAACAAACAGGCAAGTAACATTCTGCAAGAGAAGGAATGGCTTGCTCAAGAAGGCATATGAGTTATCTGTTCTTTGTGATGCTGAGGTTGCTCTTATTGTCTTCTCAAGCCGTGGTCGCCTCTATGAATATGCTAATAACAGCGTGAAAGCATCTATTGAGAGGTACAAGAAAGCGAGTTCAGATTCTACTAATGGTGGATCCACTTCTGAGATTAATGCTCAGTATTACCAGCAAGAATCTGCCAAACTGCGTGTGCAAATAAGTAACCTTCAGAATCACAACAGGCAAATGCTGGGTGAGGCTTTGAGTCCAATGAATGTGAGGGAGCTCAAAAGCCTTGAGACCAAATTGGAGAAAGGGATTAGCAAAATTCGATCCAAGAAGAACGAGCTGCTGTTTGCAGAAATTGATTACATGCAGAAGAGGGAGGTAGACTTGCATAACAACAACCAGTTTCTCAGAGCTAAGATAGCAGAAAGTGAGAGGAACCAACATAACAGTAACAACAACAACAATAATAATGTGTTGCCTGGTGGAGGAGGAACAAACTATAACAATAATAATAATAATGAATCTCATCAGCAGAACCAATTTGAGTCTCGTGGGTACTTCCAAGTCACTGCATTACAACCCGGTAACTATGATGATGCTGCTGCTGCTAGGCAAGATCAAATAATGTCCCTTCAATTAGTCTAA 783 0.4125 MSDITCSQQQQRKNNMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKASIERYKKASSDSTNGGSTSEINAQYYQQESAKLRVQISNLQNHNRQMLGEALSPMNVRELKSLETKLEKGISKIRSKKNELLFAEIDYMQKREVDLHNNNQFLRAKIAESERNQHNSNNNNNNNVLPGGGGTNYNNNNNNESHQQNQFESRGYFQVTALQPGNYDDAAAARQDQIMSLQLV 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120904g00023 260 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Stsc120904g00023 260 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Stsc120904g00023 260 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Stsc120904g00023 260 MobiDBLite consensus disorder prediction 1 20 - -
Stsc120904g00023 260 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Stsc120904g00023 260 MobiDBLite consensus disorder prediction 191 225 - -
Stsc120904g00023 260 SUPERFAMILY SRF-like 17 90 IPR036879 GO:0003677|GO:0046983
Stsc120904g00023 260 Gene3D - 28 95 IPR036879 GO:0003677|GO:0046983
Stsc120904g00023 260 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Stsc120904g00023 260 Coils Coil 139 159 - -
Stsc120904g00023 260 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc120904g00023 260 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Stsc120904g00023 260 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Stsc120904g00023 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 206 - -
Stsc120904g00023 260 MobiDBLite consensus disorder prediction 1 16 - -
Stsc120904g00023 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Stsc120904g00023 260 FunFam agamous-like MADS-box protein AGL11 28 111 - -
Stsc120904g00023 260 Pfam K-box region 98 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120904g00023 Stsc-Chr120904 108392 112885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120904g00023 1 260 MADS-box Gene Family AT3G58780 57.414 7.50e-96 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc120904g00023 K-box 3.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120904g00023 K09264 - gmx:732595 329.331