Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120904g00019 ATGAGTTGTTTCAGATGGATGAGGTTTGCAGAATCCAGAATACCACAAGAAGAAGTTGATGCTCTTAGAGAAATCACTACTGTGATGGGTGCCACCCACTGGGAATTTGATGGTGATACTTGTCAAATAAAAAAGATGACATTAGAGGCACCCATTGAAGTTAATAAAAGCAGCATTGGTTGTGAGTGCCCTCCTGAAAAGGACAACTTCTGTCATGTAGTAAGGATGAATTTCATCAAGTACAATCTTCCTGGCAGTCTTCCACCTCAACTGGTTAAGCTTCCTTACCTCAGACAATTCTCTCATTATAGTGATCTTTCTTTGAACTACCTAAACGGTTCGATCCCGAAGGAATGGGCTTCAATGAAGCTGACTAAAATTGCTCTAATGGGTAACCGTTTATCTGGGGAAATTTCGAAGGAGTTGGCAAACATTACAACTCTAACAAACCTGGACCTTGAAGCCAACCAATTCTCTGGTCATGTACCCTCACAACTTGGAAATCTGATTAACCTGCAGAGATTGGTTTTATCATCCAATAATTTATCTGGGAACCTGCCAGAGACATTTGCTCTGCTACATAATTTAAAGGATTTTAGGATAAGTGATAATAGTTTCAGTGGAAAAATACCTAGCTTCATTCAGAACTGGAAGCAACTTCAAAGACTAGACATGCATGCAAGTGGACTGGAGGGACCAATCCCATCAAATATATCTCTTTTGAGTAATGTAACTATTTTAAGGATTAGTGACATAGATGGTCCAAGTCAGACTTTTCCAGTTTTAAGCAACATGAAAGTGATGAGAAGATTGGTTCTGAGAAATTGCAATATTACTGGAGAGATTCCTATTGACATCTTGAAAATGGAGTATTTGAGAATGCTGGATGTCAGTTTTAATAAGTTGGTTGGGCAAATTCCAGCTATTAAAGCCCCGGATCCTCTGAAATTCATCTTCCTTACTGGCAACAAACTAACTGGTAATGTACCTGACTCAATATTGGTGGCTGGAGCCAATGTTGATCTTTCTTATAACAACTTTACGTGGCAAGGACCTGGGCAATCTGCTTGTCAAGAAAACCTGAATTTAAACCTAAACTTGTTCTGGAGTTCTTCAGGAACCAACAAATTACAGGATGTTCTCCCATGTTCAAAGACCTTTAAGTGTGCTAGATATTCAAGGTGTTTGCATGTTAATAGTGGTGGAAAGGATGTAATGATAAAAGAAAAAGGTGAAAATATCCTCTACATAGGGGATGATGCGAATGGTGGTACTGCTAAATATTATAATGACAATGAAAATCTTTGGGGGTTTAGCAGCACTGGTGACTTCATGGATGATGATGACATACAAAATACACGTTACACTGTGACATTGCCACATTCAAATTTGTCTGAATTATATGCATCGGCACGACTGTCCCCTATTTCGCTCACCTATTTCCATTATTGCTTGGAAAATGGGCTTTATACAGTAAAGCTACACTTTGCAGAAATACAATTTACCAATGATAGGACATCTAACAGTCTTGGGAGACGCTTCTTTGATATCTATATCCAGGAAAGATTAGTTTGGAAGGATTTTAACATTGAAGAGAAAGCGAATGGTGCTCAAAAACCATATACAGTAACAATAAATAATGTCGGCGTAACAGACAATATTCTGGAGATAAGACTCTACTATGCTGGCAAGGGAACTTCAAAGATTCCTACTAAAGCAGCTTATGGTCCCCTCATATCAGCTTTCTCTATTGTCCCTAATTCTAAACCTTGTTCAGAACAAAACAAAGCAGTGAATAATATAATCGTTGGAGTTGGATTTGGAATTTCAGCTGTTTGCCTAGTCCTTATCATAGTAGGGATCCTTTGGTGGAAAGGCTGCTTCAAAGGAATAATTAGGACAGGAAAAGGTGGGGATGGACATTGTCAGACAGGGACATATACATTAGAACAAATTAGAGCTGCCACGAATGATTTCGCTCCGGCTAACAAGATTGGGGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAGTTATCCGATGGTACTTGGGTAGCAGTCAAACAGCTTTCATCAAAATCACGGCAGGGGAATCGCGAATTTTTAAATGAGATAGCCATGATATCTTGTTTGCAACACCCTAATCTTGTGAAACTTCATGGATTTTGCATTGAAAACAATCAACTAATGTTGGTGTATGAGTACATGGAAAATAATTGCTTGGCTCGTGCTTTATTCAGCTCAGAGAATCAGCTTAAACTTGATTGGCCAACAAGGCATAGAATCTGTATTGGCATAGCAAAAGGCCTTGCATTTCTGCATGAAGAATCAGCACTCAAGATTGTTCATCGAGATATCAAATCTACTAATGTGTTACTGGATGGGAACTTAAACCCTAAAATATCCGATTTCGGGTTGGCTAGGCTTGATGAGGATGAAAGGACTCATATCAGCACTAGAGTGGCTGGAACAGTGGGATACATGGCACCGGAATATGCATTATGGGGTCACCTAACTTACAAGGCTGATGTTTACAGTTATGGAATTGTGGTCTTGGAAATTGTCAGTGGGAAGAACAATAAAAATTACAGGCCAAGTGATGATTGTTTTTGTCTTTTAGATAAGGCATTTCATCTGCAATCCACTCAGAACATAATGGAACTGGTTGATGAAAGGTTGGGATTAGCAGTAAACCCAACTGAAGCAGAAAACCTGTTGAAAGTAGCTCTGCTGTGCACAAATGTATCTCCGTCGCATAGGCCTACAATGTTAGAGGTTGTGAACATGCTCGAAGAAAGAATGAGCATCCCAGATGTTATCCCGGAAACAAGTCTATTCCGGGAAGATTTAAGGTTTAAAGCCACAAGAGACATCTATCAACATGGTGAAAATCAAAGTTTGACATCAAGCCAAACAGACAATTCAATAGGATATTTCGTACCTATATCTTCCTCAGTTTCTGGCAATGACATGCATCAGATATGCTCAAAATCATAG 2994 0.3928 MSCFRWMRFAESRIPQEEVDALREITTVMGATHWEFDGDTCQIKKMTLEAPIEVNKSSIGCECPPEKDNFCHVVRMNFIKYNLPGSLPPQLVKLPYLRQFSHYSDLSLNYLNGSIPKEWASMKLTKIALMGNRLSGEISKELANITTLTNLDLEANQFSGHVPSQLGNLINLQRLVLSSNNLSGNLPETFALLHNLKDFRISDNSFSGKIPSFIQNWKQLQRLDMHASGLEGPIPSNISLLSNVTILRISDIDGPSQTFPVLSNMKVMRRLVLRNCNITGEIPIDILKMEYLRMLDVSFNKLVGQIPAIKAPDPLKFIFLTGNKLTGNVPDSILVAGANVDLSYNNFTWQGPGQSACQENLNLNLNLFWSSSGTNKLQDVLPCSKTFKCARYSRCLHVNSGGKDVMIKEKGENILYIGDDANGGTAKYYNDNENLWGFSSTGDFMDDDDIQNTRYTVTLPHSNLSELYASARLSPISLTYFHYCLENGLYTVKLHFAEIQFTNDRTSNSLGRRFFDIYIQERLVWKDFNIEEKANGAQKPYTVTINNVGVTDNILEIRLYYAGKGTSKIPTKAAYGPLISAFSIVPNSKPCSEQNKAVNNIIVGVGFGISAVCLVLIIVGILWWKGCFKGIIRTGKGGDGHCQTGTYTLEQIRAATNDFAPANKIGEGGFGPVYKGQLSDGTWVAVKQLSSKSRQGNREFLNEIAMISCLQHPNLVKLHGFCIENNQLMLVYEYMENNCLARALFSSENQLKLDWPTRHRICIGIAKGLAFLHEESALKIVHRDIKSTNVLLDGNLNPKISDFGLARLDEDERTHISTRVAGTVGYMAPEYALWGHLTYKADVYSYGIVVLEIVSGKNNKNYRPSDDCFCLLDKAFHLQSTQNIMELVDERLGLAVNPTEAENLLKVALLCTNVSPSHRPTMLEVVNMLEERMSIPDVIPETSLFREDLRFKATRDIYQHGENQSLTSSQTDNSIGYFVPISSSVSGNDMHQICSKS 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120904g00019 997 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 393 587 - -
Stsc120904g00019 997 Gene3D Ribonuclease Inhibitor 258 397 IPR032675 -
Stsc120904g00019 997 SUPERFAMILY Protein kinase-like (PK-like) 643 957 IPR011009 -
Stsc120904g00019 997 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 187 253 - -
Stsc120904g00019 997 Gene3D - 398 589 - -
Stsc120904g00019 997 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 20 186 - -
Stsc120904g00019 997 Pfam Malectin domain 395 582 IPR021720 -
Stsc120904g00019 997 SMART serkin_6 659 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120904g00019 997 Pfam Protein tyrosine and serine/threonine kinase 663 929 IPR001245 GO:0004672|GO:0006468
Stsc120904g00019 997 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 21 965 - -
Stsc120904g00019 997 FunFam Putative LRR receptor-like serine/threonine-protein kinase 735 941 - -
Stsc120904g00019 997 ProSiteProfiles Protein kinase domain profile. 659 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120904g00019 997 ProSitePatterns Serine/Threonine protein kinases active-site signature. 780 792 IPR008271 GO:0004672|GO:0006468
Stsc120904g00019 997 SUPERFAMILY L domain-like 67 332 - -
Stsc120904g00019 997 Gene3D Phosphorylase Kinase; domain 1 640 734 - -
Stsc120904g00019 997 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 634 734 - -
Stsc120904g00019 997 CDD STKc_IRAK 665 931 - -
Stsc120904g00019 997 Gene3D Ribonuclease Inhibitor 187 257 IPR032675 -
Stsc120904g00019 997 Gene3D Ribonuclease Inhibitor 25 186 IPR032675 -
Stsc120904g00019 997 Gene3D Transferase(Phosphotransferase) domain 1 735 938 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120904g00019 Stsc-Chr120904 75191 80982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120904g00019 3 824 Receptor kinase-like Gene Family AT1G29750 58.596 0.0 968
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc120904g00019 PK_Tyr_Ser-Thr 8.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120904g00019 - - mtr:11406167 1394.02