Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120904g00015 ATGGCTGGGACTCCATCATCAGAAGAAACAAAAGCAGCAGAAGTGTTGGGGACATATTTCTTGATATTTGCTGGGTGTGCTGCGGTGGTTGTGAACAAGAACAACGACAATGTGGTTACACTCCCTGGGATCTCAATTGTTTGGGGATTGGCTGTTATGGCACTTGTCTATTCCACTGGTCACATCTCTGGTGCCCATTTCAACCCTGCTGTTACCATTGCTTTTGCTACTACTAGAAGGTTCCCCTTGAAGCAGGTACCGGCTTATGTAGTAGCACAGGTCATTGGATCTACACTGGCAAGTGGTACCCTCAGATTAGTTTTCACTGGCAAGGAAAACCAATTCGCAGGAACACTCGCTGCTGGCTCTCAATTACAAGCTTTTGTGCTCGAATTCATAATCACTTTTTATCTTATGTTCATCATTTCTGGGGTTGCAACTGATAGCAGAGCGGTAGGTGAGTTGGCAGGGCTTGCAGTTGGCTCCACGGTACTGCTGAATGTGATGTTTGCAGGGGCAATAACAGGGGCATCAATGAACCCAGCAAGGAGCATAGGGCCTGCAATAATTCACAGTGAATACAGAGGAATATGGATATACTTAACATCTCCAATTCTGGGGGCTATTGCTGGTGCTTGGGTTTACAACGCTCTAAGACACACTGACCCTTCTCCTTCTCTTAAAACCACCGCTTCTTTCGTCAAACAACCACCTAGTGATTAG 723 0.462 MAGTPSSEETKAAEVLGTYFLIFAGCAAVVVNKNNDNVVTLPGISIVWGLAVMALVYSTGHISGAHFNPAVTIAFATTRRFPLKQVPAYVVAQVIGSTLASGTLRLVFTGKENQFAGTLAAGSQLQAFVLEFIITFYLMFIISGVATDSRAVGELAGLAVGSTVLLNVMFAGAITGASMNPARSIGPAIIHSEYRGIWIYLTSPILGAIAGAWVYNALRHTDPSPSLKTTASFVKQPPSD 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120904g00015 240 ProSitePatterns MIP family signature. 66 74 IPR022357 -
Stsc120904g00015 240 NCBIfam MIP family channel protein 13 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120904g00015 240 Gene3D Glycerol uptake facilitator protein. 8 226 IPR023271 -
Stsc120904g00015 240 CDD MIP 13 216 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120904g00015 240 SUPERFAMILY Aquaporin-like 12 222 IPR023271 -
Stsc120904g00015 240 PANTHER AQUAPORIN NIP2-1 12 224 IPR034294 -
Stsc120904g00015 240 PRINTS Major intrinsic protein family signature 161 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120904g00015 240 PRINTS Major intrinsic protein family signature 85 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120904g00015 240 PRINTS Major intrinsic protein family signature 198 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120904g00015 240 PRINTS Major intrinsic protein family signature 48 72 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120904g00015 240 PRINTS Major intrinsic protein family signature 9 28 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120904g00015 240 PRINTS Major intrinsic protein family signature 130 148 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120904g00015 240 Pfam Major intrinsic protein 11 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120904g00015 Stsc-Chr120904 54837 56446 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120904g00015 13 235 Major Intrinsic Protein MIP AT5G37820 59.375 3.65e-90 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120904g00015 K09874 - gmx:100798526 361.303