Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120904g00014 ATGGGTGAATATTCATCAAAAAGCGGTGATGTTACTATATCTGTAACTAGCAAGGAGGAAGCAGCAGGAGGAGGTGGTAGATCCTGCAAAACAACCCAAGCAGGATCATGCAAATATTTTCTTCTCTTTCAGAAGATGGTGGCAGAATTGGTGGGGACGTATTTCTTGATATTTACAGGGTGCGCAGCCATTGCTGCCAACAACGACTACGGGAAGCAGGTAACGCTTGTTGGGATTGCAACTGTATGGGGATTGGTCGTTATGATCATCGTTTACTCAATTGGTCATGTCTCCGGGGCCCACCTCAACCCCGCCGTCACTATTGCTTTTGCTTCCATCAGAAAGTTTCCACTCACTCAGGTACCGGCTTATATAGCAGCTGAAGTTCTTGGAGCCATCCTAGGAAGCGGAACAGTGAGATTAATTTTCAGTGGTAACAATCTGCAAGTTCAATTCACAGGAACCTTGCCAACTGGATCAAACATCCAATCCTTCCTCATTGAATTCATTATCACTTTTTTCCTTATGTTCGTCATTTCTGGGGTTGCTACCGATAACAGAGCGGTTGGTACCTTGGCTGGAGTTGCAATCGGCTCTACCGTACTGCTTAATGTGCTAATTGCTGCGCAAGTGTCAGGAGCATCAATGAACCCAGCAAGAAGTCTAGGACCTGCATTTGTGCACCATGAATACAGAGGAATATGGATATACATGGTGTCACCCACCATTGGAGCTGTGGCAGGTGCATGGGTCTACAACATACTCAGAGAAAACAAGGAGAAGCCAAGCATTCACCTCACCAACAACGCCTCTTTCAACTGA 822 0.4599 MGEYSSKSGDVTISVTSKEEAAGGGGRSCKTTQAGSCKYFLLFQKMVAELVGTYFLIFTGCAAIAANNDYGKQVTLVGIATVWGLVVMIIVYSIGHVSGAHLNPAVTIAFASIRKFPLTQVPAYIAAEVLGAILGSGTVRLIFSGNNLQVQFTGTLPTGSNIQSFLIEFIITFFLMFVISGVATDNRAVGTLAGVAIGSTVLLNVLIAAQVSGASMNPARSLGPAFVHHEYRGIWIYMVSPTIGAVAGAWVYNILRENKEKPSIHLTNNASFN 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120904g00014 273 CDD MIP 44 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120904g00014 273 PRINTS Major intrinsic protein family signature 198 220 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120904g00014 273 PRINTS Major intrinsic protein family signature 120 139 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120904g00014 273 PRINTS Major intrinsic protein family signature 167 185 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120904g00014 273 PRINTS Major intrinsic protein family signature 83 107 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120904g00014 273 PRINTS Major intrinsic protein family signature 235 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120904g00014 273 PRINTS Major intrinsic protein family signature 44 63 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120904g00014 273 Pfam Major intrinsic protein 42 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120904g00014 273 NCBIfam MIP family channel protein 48 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120904g00014 273 ProSitePatterns MIP family signature. 101 109 IPR022357 -
Stsc120904g00014 273 Gene3D Glycerol uptake facilitator protein. 8 265 IPR023271 -
Stsc120904g00014 273 SUPERFAMILY Aquaporin-like 39 259 IPR023271 -
Stsc120904g00014 273 PANTHER AQUAPORIN NIP2-1 36 260 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120904g00014 Stsc-Chr120904 50227 52152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120904g00014 28 272 Major Intrinsic Protein MIP AT5G37820 52.381 3.30e-88 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120904g00014 K09874 - gmx:100798526 328.176