Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120904g00012 ATGGATGAAGCTCAGAGCAATTCAAATTCCCTGCCACCTTTTCTGGTAAAGACTTATGAGATGGTGGATGATCCTTCCACTGATCCCATTGTTTCTTGGAGTGCCTCTAATAGAAGTTTCGTTGTGTGGAATCCTCCGGATTTCGCTAGGGATTTGCTGCCCAGATTCTTCAAGCATAATAATTTCTCAAGCTTTATCAGGCAACTGAACACTTATGGTTTTAAGAAGATTGACCCTGAACAATGGGAATTTGCAAATGATGATTTTGTAAGAGGTCAACCGCATCTTATGAAGAATATCCACAGGCGAAAACCGGTTCATAGTCATTCTTTACAGAATCTTCAGGCGCAAGCCCCACTTACAGAATCAGAAAGGAAGAGTTTACAAGATGAAATAGAGAGGCTTAACCGTGACAAAGAACAACTTCTTATGGAGCTACAGAGACATGAACAGGAGTGGCAAGCATATGAGATGCGAATACATTGCTCAAAGGACCGTGTGGAGAAGTTGGAGGAAAAGCATCAGAAGATGATCTCTTCTGTTTCCAGTTTACTGCAGAAACCTGGAATTGACTTGAATCAATTGGCATTGCTAGAAACCGCAGAGAGAAAACGAAGGTTGCCAAGAAATGACTATCTTAGTGATGAAGCTAACATTGAAGATACAACTGAGACTGACGACCAAATGTTACCCAAAGAAAATCCACGGGACTCCTCCGTTTTGTCAATAATCACGGAGCGGTTGGATCAGCTTGAGTCATCCATGGTGTTTTGGGAAACCATTTCAAATGATGTTTGTGACGCGCCCATTCACATTCATTCGAGCTTGGACCTTGATGAATCCACAAGTTGTGCCGATAGTCTGTCTATATCTTGTCCCCTACTAGATGTTGATGTTCCGCCTAAGTCATCTGGAATTGACATGAACGCTGAGCCTGCTTCTGCTCCTGTTTCCGAGCCTGCTGCCGCATCAAAAGAACAACCTGCCGGCACAACTGCTGTGGTGGCTGGTGCTAATGATGTATTTTGGGAACAATTCTTGACTGAGAATCCTGGTTCGTCAGAAGCACATGAAGTGCAATCAGAAAGAAAGTATCATGATAGCAAGGGTGAAGGAAAACCTAGTGACCCAGGAAAGTTTTGGTGGAACATTCGAAACACAAGTAATCTTCCAGAACAAATGGGTCATGTTAGTCAAGCAGAGAAAACTTAG 1212 0.4299 MDEAQSNSNSLPPFLVKTYEMVDDPSTDPIVSWSASNRSFVVWNPPDFARDLLPRFFKHNNFSSFIRQLNTYGFKKIDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLQAQAPLTESERKSLQDEIERLNRDKEQLLMELQRHEQEWQAYEMRIHCSKDRVEKLEEKHQKMISSVSSLLQKPGIDLNQLALLETAERKRRLPRNDYLSDEANIEDTTETDDQMLPKENPRDSSVLSIITERLDQLESSMVFWETISNDVCDAPIHIHSSLDLDESTSCADSLSISCPLLDVDVPPKSSGIDMNAEPASAPVSEPAAASKEQPAGTTAVVAGANDVFWEQFLTENPGSSEAHEVQSERKYHDSKGEGKPSDPGKFWWNIRNTSNLPEQMGHVSQAEKT 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120904g00012 403 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc120904g00012 403 MobiDBLite consensus disorder prediction 212 235 - -
Stsc120904g00012 403 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Stsc120904g00012 403 MobiDBLite consensus disorder prediction 381 403 - -
Stsc120904g00012 403 MobiDBLite consensus disorder prediction 349 403 - -
Stsc120904g00012 403 FunFam Heat shock transcription factor 1 7 104 - -
Stsc120904g00012 403 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc120904g00012 403 Coils Coil 167 187 - -
Stsc120904g00012 403 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc120904g00012 403 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc120904g00012 403 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc120904g00012 403 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc120904g00012 403 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 298 IPR027725 -
Stsc120904g00012 403 MobiDBLite consensus disorder prediction 356 374 - -
Stsc120904g00012 403 Gene3D - 6 104 IPR036388 -
Stsc120904g00012 403 Coils Coil 111 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120904g00012 Stsc-Chr120904 41457 44104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120904g00012 8 403 HSF AT4G18880 52.088 3.53e-124 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc120904g00012 HSF_DNA-bind 8.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120904g00012 K09419 - gmx:100817602 586.645