Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120904g00011 ATGAGGATCAACTCGGAGCGAAAGCCGGGGCAGAATGCAAAGCAGAATTCTGTTCCATCTTTTGGTTCACCACCAAAGGATGCATGTGGGAATAGAGGTAGGTTTTATGGAGGGGAAGATGATGCCTTCTGGAGACTCTCATTTGGTGAAGAGAGCCATGAGCATACCAAGAGTAGTGAAGATATCATGAGACCAGCACTGCATAATTTGGATAGTGATCATGCCAATGATGTCATTCAGTCCTCAGCACAATTTGGACTAACTGATAAAAGACATGGAAGAAGAGATGCTACTCTGAGGTTCAAGCAGAAGGATATTGGAATGGGAGAGAAAAAAAAGTTTCCAAGTGAGAAAAAGGCTTTTCTGCCATCAAATGATGAATGTGATCATGGAGGAAAAGAATTGGAACTCTTAAGGAGGAGATATGAGAGGAAAGCAAAGAAGGTTTTACAAGATCAACTCTTGAAACTAGAAAGAGCTGCAGATAATCTTGAAGCTGAATATGCACCTAGAAACTCTAAGTCCTTAGAAGATGATGTTCTGAAATCCGAATCGCCTAGAATGATTCGAACACCAAGAACAAATTCACACATCTCCGCCGTACATTCAACGAATTCTGGCTTTGGAAGTCTTAAAGAAGATGGTGTTAACTCTGAGAAGAGTACTGAAAAGTTGAGAGTGAAGGTTAACAAGAAAAGGCAATCACTTCATGTAAGCAGAGAACAGCAGAGGAGGAAATCAAGGAATAGTCCAAGAGTAAGAGTACATTCTCCAAGGATGGCTTCCAAGGTCGAAATCTGCAAAATAAAGGCCATAGAAGACATTAAGAAAGCAAAACTAAAGATGAAGAAAGAGGAGGAAACTTCAGAGGAAACAGAAGATGTGGACAGCTTTGCTGTGGTGAAATGCTCAATGGATCCGCAACAAGACTTCAGAGATTCGATGATGGAGATGATCATGGAGAGGAAGATCAGTAGGCCAGAAGAAATGGAGGAGCTGTTGGCATGTTATCTCACACTGAATTCTAGTGAGTATCATGATATCATCATCAAGGTTTTCAGGGAGGTGTGGTTATATTTGAACAAGGTGTTTCACGATTTCGAATTGATCACCAAACTCAAGTTTGATGCAACTGCATCAACCTTCAATTGCAAGGTGATGGAAGAATGGTAA 1173 0.4092 MRINSERKPGQNAKQNSVPSFGSPPKDACGNRGRFYGGEDDAFWRLSFGEESHEHTKSSEDIMRPALHNLDSDHANDVIQSSAQFGLTDKRHGRRDATLRFKQKDIGMGEKKKFPSEKKAFLPSNDECDHGGKELELLRRRYERKAKKVLQDQLLKLERAADNLEAEYAPRNSKSLEDDVLKSESPRMIRTPRTNSHISAVHSTNSGFGSLKEDGVNSEKSTEKLRVKVNKKRQSLHVSREQQRRKSRNSPRVRVHSPRMASKVEICKIKAIEDIKKAKLKMKKEEETSEETEDVDSFAVVKCSMDPQQDFRDSMMEMIMERKISRPEEMEELLACYLTLNSSEYHDIIIKVFREVWLYLNKVFHDFELITKLKFDATASTFNCKVMEEW 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120904g00011 390 ProSiteProfiles OVATE domain profile. 300 359 IPR006458 -
Stsc120904g00011 390 MobiDBLite consensus disorder prediction 216 248 - -
Stsc120904g00011 390 MobiDBLite consensus disorder prediction 1 22 - -
Stsc120904g00011 390 MobiDBLite consensus disorder prediction 82 126 - -
Stsc120904g00011 390 MobiDBLite consensus disorder prediction 191 257 - -
Stsc120904g00011 390 MobiDBLite consensus disorder prediction 88 126 - -
Stsc120904g00011 390 MobiDBLite consensus disorder prediction 1 34 - -
Stsc120904g00011 390 Coils Coil 147 167 - -
Stsc120904g00011 390 NCBIfam uncharacterized plant-specific domain TIGR01568 298 361 IPR006458 -
Stsc120904g00011 390 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 175 360 IPR038933 GO:0045892
Stsc120904g00011 390 Pfam Transcriptional repressor, ovate 304 360 IPR006458 -
Stsc120904g00011 390 Coils Coil 268 295 - -
Stsc120904g00011 390 MobiDBLite consensus disorder prediction 191 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120904g00011 Stsc-Chr120904 38383 41657 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Stsc120904g00011 Ovate 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120904g00011 - - ahf:112792751 573.933