Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120904g00009 ATGGCTTCTGGTGTTATATTCTCGTCGTTGCGGCGGCGTCGGTCTCCGTCGCTGGAGGCCTTCCTGGCGCCGGTAGGTCTATCCGACACGGCGCTCGTCCGAACCGTCGTCGGTGTCGCCAACGACCTAGTCATAGGCTTCTCCGATCACCGGTTCCCCTTCCAGCGCAAGAACTCTCGCTCCCTAATCCGAAAGGTCGAGGTTTTTCAGCTCCTATTAGAGTCACTGAGAGATTCAAGTGTGAGTCTTCCCTCCACGGCGGCGCTCTGCTTGAGGGAGCTATATTTGCTGGTATATCGTTCCAAGATTCTCCTTGATTACTGCGCGCAATCGAGTAAGTTGTGGCTGTTGCTTCAAAACCATTCAATTTCTGGTCACTTCCATGATTTGGGTCAAGAATTTTCGACCCTTTTGGATGTTTTCCCTGTTAGGGCCGTTGACCTTAGCGATGATGTTAGGGAGCAGGTTGAGTTGTTGAGGAGACAGTCTAGGAAGGCCAGGTTGTTTGTGGATAAGAGGGATGATGGCTTTAGGATAAAGTTCTTTTCTTTTCTCGATGCATTCGAGAATGGGAGGATTCCTTGTGCTGATGAATCGAGGCGTTTCTATGTTGATGAGTTGAAGATTAGTGATGCTAGGAGTTGTAGGGCTGAAATTGAAGCTCTGGAAGAGCAGATTGTTAATCATGAGGGTGATATTGAGCCAACTGTTTCTGTGCTTAATGGATTGGTAGCAATGACGCGGTATAGCAGGTTTTTGCTCTTTGGGTTTGAGGAAGAAGATGATGATTTTGGTTTGTGGAATGAGAATCAGAAGAAGGCCAAGGTGAGATTGGGAAATCAAGATATAGCGGACAAGATTTTGACCATTCCTAAGGACTTTTGCTGTCCGATATCATTGGATTTGATGCGTGATCCGGTGATAATATCAACAGGGCAGACTTATGATCGGAGTTCCATATCGAGGTGGATGGATGAAGGGCATTGTAGCTGTCCAAAAACAGGCCAAACACTTGCACACAACCGGCTTGTTCCTAATCGTGCGCTTAGGAATTTGATCGGGCAATGGTGCAGTGCAAACGGAATACCCTATGATCCACCAGAGGTGATTGATCCATCTGCTGAAACTTTTGCCTCAGCTTGTCCTGCAAAAGCTACCGTTGAAGCCAACAAAGCAACTGTGGCGCTTCTCATTCAGCAGCTAGCTAATGGATCACATGCTGGAAGGACTGTAGCTGCAAGGGAGATAAGATTGCTTGCAAAAACTGGAAAAGAGAACCGTGCCTTCATTGGAGAGGCAGGGGCAATTCCTTATCTTCGGGATTTACTTTCTTCTCCTAACACTGTTGTGCAGGAGAACTCGGTAACTGCATTGCTCAACCTATCCATTTTTGACAGAAACAAAAGTCGCATCATGGATGAGGCAGGGTGCTTGGGATCAATAGTTGATGTGTTGAGATATGGACAAACAACTGAGGCAAGGGAAAATGCTGCTGCAACATTGTTCAGTCTCTCTGCTGTCCATGATTATAAAAAAAGAATTGCAGATAATGTGGGAGCTGTTGAAGCACTGGCAAGTCTGTTGCAAGAGGGGACCCCAAGGGGAAAGAAGGATGCTGTAACAGCATTGTTTAACCTTTCCACCCACACTGAGAACTGTGCAAGGATGATAGCGGCAGGAGCAGTAACGGGTTTAATCGAGGCATTGGGGAGTGAAGGAATTGCTGAGGAAGCAGCAGGTGCCTTGGCCTTGATTGTCCGGCAGCCACTTGGGGCAAAAGCTATTGTGAGCGAGCAAACAGCAGTGGCTGGATTGATAGGAATGATGCGTTGTGGATCACCAAGAGGTAAAGAGAATGCAGTTGCCGCATTGCTGGAATTGTGCCGCAGTGGTGGCACAGCAGCAACCGAAAGGGTGGTTAGGGTGCCGGCTTTGGCAGGGTTACTTCAAACCCTGCTCTTCACAGGAACAAAGCGAGCAAGACGAAAAGCAGCTTCACTTGCAAGAGTGTTTCAGAGATGTGAGAATGCCCCCCTACATTATGGTGGATTGGGCCTAGGGTATGCATCTGCTAGTAATTCAACATCAACAAGGGATACAACAAGCTTTGCTGGTGATGTTTCAGTACCGTTGTCCATTTCTGTACCTGTATTGTAG 2157 0.4766 MASGVIFSSLRRRRSPSLEAFLAPVGLSDTALVRTVVGVANDLVIGFSDHRFPFQRKNSRSLIRKVEVFQLLLESLRDSSVSLPSTAALCLRELYLLVYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLGQEFSTLLDVFPVRAVDLSDDVREQVELLRRQSRKARLFVDKRDDGFRIKFFSFLDAFENGRIPCADESRRFYVDELKISDARSCRAEIEALEEQIVNHEGDIEPTVSVLNGLVAMTRYSRFLLFGFEEEDDDFGLWNENQKKAKVRLGNQDIADKILTIPKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMDEGHCSCPKTGQTLAHNRLVPNRALRNLIGQWCSANGIPYDPPEVIDPSAETFASACPAKATVEANKATVALLIQQLANGSHAGRTVAAREIRLLAKTGKENRAFIGEAGAIPYLRDLLSSPNTVVQENSVTALLNLSIFDRNKSRIMDEAGCLGSIVDVLRYGQTTEARENAAATLFSLSAVHDYKKRIADNVGAVEALASLLQEGTPRGKKDAVTALFNLSTHTENCARMIAAGAVTGLIEALGSEGIAEEAAGALALIVRQPLGAKAIVSEQTAVAGLIGMMRCGSPRGKENAVAALLELCRSGGTAATERVVRVPALAGLLQTLLFTGTKRARRKAASLARVFQRCENAPLHYGGLGLGYASASNSTSTRDTTSFAGDVSVPLSISVPVL 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120904g00009 718 Gene3D - 391 669 IPR011989 -
Stsc120904g00009 718 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 434 476 IPR000225 GO:0005515
Stsc120904g00009 718 FunFam RING-type E3 ubiquitin transferase 366 687 - -
Stsc120904g00009 718 SUPERFAMILY RING/U-box 279 364 - -
Stsc120904g00009 718 PANTHER U BOX DOMAIN-CONTAINING 57 674 - -
Stsc120904g00009 718 SMART arm_5 465 506 IPR000225 GO:0005515
Stsc120904g00009 718 SMART arm_5 423 463 IPR000225 GO:0005515
Stsc120904g00009 718 SMART arm_5 508 548 IPR000225 GO:0005515
Stsc120904g00009 718 SMART arm_5 588 629 IPR000225 GO:0005515
Stsc120904g00009 718 SMART arm_5 549 587 IPR000225 GO:0005515
Stsc120904g00009 718 SUPERFAMILY ARM repeat 393 671 IPR016024 -
Stsc120904g00009 718 CDD RING-Ubox_PUB 291 343 IPR045210 -
Stsc120904g00009 718 Pfam U-box domain 290 360 IPR003613 GO:0004842|GO:0016567
Stsc120904g00009 718 Coils Coil 212 232 - -
Stsc120904g00009 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 364 IPR013083 -
Stsc120904g00009 718 FunFam RING-type E3 ubiquitin transferase 289 364 - -
Stsc120904g00009 718 ProSiteProfiles U-box domain profile. 289 363 IPR003613 GO:0004842|GO:0016567
Stsc120904g00009 718 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
Stsc120904g00009 718 SMART Ubox_2 293 356 IPR003613 GO:0004842|GO:0016567
Stsc120904g00009 718 Pfam Armadillo/beta-catenin-like repeat 424 462 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120904g00009 Stsc-Chr120904 29190 31815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120904g00009 1 718 U-box Gene Family AT1G29340 66.757 0.0 893
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120904g00009 - - gmx:100811153 1066.99