Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120902g00028 ATGGAACCCTTACCCTGCCACAATCCACCGCAACTACCCGTAACCGACAGCACCAGCATCCTCACCGACTCTGCCTGGATCGGAGGAGAGGAAGGCCACACCATGTGCCTGCCGCCGGAGAACGACAACAACAACAACAATAATAATCAATCGCTGTCTTCAAGCTCAGGTGAGGGTCCGCCGGAGAGTTCGATCGCCTCCGACGGAAAACAGCTTGAGAAAGAGAAACCACCGAGTAGAAGTAAGAAGAAGCAGAAACGAATGAAGCAGCCACGGTTTGCTTTTATGACTAAGAGCGAAACCGATCATCTTGAAGATGGCTATAGATGGCGAAAGTACGGCCAGAAGGCAGTTAAAAATAGTCCATTCCCCAGGAGTTACTATCGTTGCACAAACAACAACTGCAGTGTGAAGAAAAGGGTGGAGCGCTCCTCGGAGGACCCAACTATTGTGATCACCACATATGAAGGCCAACACTGCCACCACTCCGCAGGGACTTTCCACCAACACCGCATGATTAGTAGTAGTAGTAATCATAAACCCTCATTTGCAACTCATCATCAATTGTCTCTTGCAAATATGTCACACTTCTATTATCCAATTAATCATTTACCTGAACACAACACACTTATTAGTAGTACTGCTTCTGATGATCCTTATAGCCAATCATCACACAGTAATAATAATAATTACAATGGAAGATGCAGCATTACATTGGCAGAAGATTCATCAAACCCAGAAGAGCTACCCACAGATGATGGACTACTCGGAGATATTCTTGTGCCTAGGCAAATCCGTAACGGATGA 807 0.4597 MEPLPCHNPPQLPVTDSTSILTDSAWIGGEEGHTMCLPPENDNNNNNNNQSLSSSSGEGPPESSIASDGKQLEKEKPPSRSKKKQKRMKQPRFAFMTKSETDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNNNCSVKKRVERSSEDPTIVITTYEGQHCHHSAGTFHQHRMISSSSNHKPSFATHHQLSLANMSHFYYPINHLPEHNTLISSTASDDPYSQSSHSNNNNYNGRCSITLAEDSSNPEELPTDDGLLGDILVPRQIRNG 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120902g00028 268 SUPERFAMILY WRKY DNA-binding domain 96 162 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc120902g00028 268 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 42 213 IPR044810 GO:0003700
Stsc120902g00028 268 Pfam WRKY DNA -binding domain 105 161 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc120902g00028 268 SMART WRKY_cls 104 163 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc120902g00028 268 MobiDBLite consensus disorder prediction 38 62 - -
Stsc120902g00028 268 ProSiteProfiles WRKY domain profile. 99 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc120902g00028 268 MobiDBLite consensus disorder prediction 210 237 - -
Stsc120902g00028 268 MobiDBLite consensus disorder prediction 1 94 - -
Stsc120902g00028 268 Gene3D WRKY domain 91 157 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc120902g00028 268 FunFam WRKY transcription factor 57 90 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120902g00028 Stsc-Chr120902 114287 118071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120902g00028 47 267 WRKY Transcription Factor Family AT1G69310 49.321 3.27e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc120902g00028 WRKY 5.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120902g00028 - - gmx:100170676 206.838