Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc120902g00025 | ATGATGATGATGATGGAGGAGAGGAAGAAGTTTGTGTGCAAGTATTGCAGCAAGAGGTTCCCATGTGGCAAGTCTCTTGGTGGTCACATCAGGACCCACATCACTGAAGAAAGAACAGCCATCAATGCCTCTTCTAATTCTCCCATTGCTGCTGCTGCTGCTACTCATGATCTTCTTCTCAAGAAGAAGAGGAAGAGGGATTCACCATGGCCTACTCATCAATCTGGACCTGCTGCTAACAATAATTATGGCCTTAGAGAGAATCCCAAGAAGACAACAAGGTTTGTGCATATTGATGCTGCTGCTGCTGCTGCCACCAACTTGGCACGTGACAAGGAAGAAAGGTTCTGCAAGGAATGTGGGAAAGGCTTTCCATCAATGAAAGCTCTTTGTGGCCACATGGCTTGTCACTCTGACAAGGACAAAGACAGAGAGAAATTTGTGGTCATGGCTATGGATGATGATGATGATGATGATGGATATAGCCAATCTGATGCTGAGAGTTCTGGTGCTGCTTCATTGCTTCCAAGGAGGAGATCCAAGAGGATGATGAGGTTCAAGAACCTCAGACCCTTTTGTTCTTCTTCTCCTTCTGCTTCTGTCTCCGAGGTGGAGCAGCAGCAGGAGGAGCAAGAAGAGGTTGCTAGGATGCTCATGATGCTCTCAAGAGACTCCGGCTGCCGGAAAGGTCGATTGCCTTCTCTTACCGAGTCTTCTGATAACAATTCTGTTGTTCTGGACACCAATAAGGTTGCTGCTGTGGCTGTGAGTAATAATGGCAGCAGGAAGAACTTTGTGCCTAATGATTCAGATTCTGCTGTTGGGTCTCTGAGGAGTACTGGCCTCAAGAACAAAATGGTTGATTCATCAGATGTCTCAATGGATGAATTCAAAGGGTGGAATAAGAATGTTAAAGATAAAGACAAAGAGAGAAGAAGCAAATACAGTAGCAGTGTTGCTTTTGCTGCTACAGTTAAGGATTTGGAATATGAAACAACAGTAACTACTACAACTACTACAAGGAAGAAGTTTGATTTCAGAAAGAGAGCAAACTATGATTCTCTTATTCACACTTCAACTGAGGTTCCTATCAAGAGTAATGGAAAAGCTGGTTTTTCCAATGATGAATATGATGATTGTTCTTATGATTCAACAGAATATGATGATGTTGATGAAGATGAAGAGAGTGATGAGAACAGCACTGATACTGATTCATTTCCTGCTCCAAAGGCTCATAGCACTAAGGCCAGCACAAAGGGTAATAAGAGCAAGAAGAACATGAAGAATAAGAAGAAGAAGAAGAAGAAGAACAAGTTGAAGTTAAAGAAGAGCAAGGAACATGAATGTCCAATTTGCTACAAGATTTTCAAGTCAGGACAAGCATTAGGAGGACACAAAAGATCCCATTTCATTGGAGGTTCATCAGAAGAGAACACTTTGGTCATTAAGCAGCATCATGCTCCTCCTTCTTCTCTTGTCGTTCCTAATTGCCTAATTGATCTCAATCTTCCTGCTCCTGTTGATGACTAA | 1530 | 0.4255 | MMMMMEERKKFVCKYCSKRFPCGKSLGGHIRTHITEERTAINASSNSPIAAAAATHDLLLKKKRKRDSPWPTHQSGPAANNNYGLRENPKKTTRFVHIDAAAAAATNLARDKEERFCKECGKGFPSMKALCGHMACHSDKDKDREKFVVMAMDDDDDDDGYSQSDAESSGAASLLPRRRSKRMMRFKNLRPFCSSSPSASVSEVEQQQEEQEEVARMLMMLSRDSGCRKGRLPSLTESSDNNSVVLDTNKVAAVAVSNNGSRKNFVPNDSDSAVGSLRSTGLKNKMVDSSDVSMDEFKGWNKNVKDKDKERRSKYSSSVAFAATVKDLEYETTVTTTTTTRKKFDFRKRANYDSLIHTSTEVPIKSNGKAGFSNDEYDDCSYDSTEYDDVDEDEESDENSTDTDSFPAPKAHSTKASTKGNKSKKNMKNKKKKKKKNKLKLKKSKEHECPICYKIFKSGQALGGHKRSHFIGGSSEENTLVIKQHHAPPSSLVVPNCLIDLNLPAPVDD | 509 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc120902g00025 | 509 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 13 | 33 | IPR013087 | - | |
Stsc120902g00025 | 509 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 449 | 469 | IPR013087 | - | |
Stsc120902g00025 | 509 | SUPERFAMILY | beta-beta-alpha zinc fingers | 116 | 469 | IPR036236 | - | |
Stsc120902g00025 | 509 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 115 | 142 | IPR013087 | - | |
Stsc120902g00025 | 509 | MobiDBLite | consensus disorder prediction | 417 | 442 | - | - | |
Stsc120902g00025 | 509 | MobiDBLite | consensus disorder prediction | 73 | 87 | - | - | |
Stsc120902g00025 | 509 | SMART | c2h2final6 | 115 | 137 | IPR013087 | - | |
Stsc120902g00025 | 509 | SMART | c2h2final6 | 11 | 33 | IPR013087 | - | |
Stsc120902g00025 | 509 | SMART | c2h2final6 | 447 | 469 | IPR013087 | - | |
Stsc120902g00025 | 509 | MobiDBLite | consensus disorder prediction | 386 | 443 | - | - | |
Stsc120902g00025 | 509 | MobiDBLite | consensus disorder prediction | 63 | 87 | - | - | |
Stsc120902g00025 | 509 | Pfam | C2H2-type zinc finger | 11 | 33 | - | - | |
Stsc120902g00025 | 509 | Pfam | C2H2-type zinc finger | 447 | 469 | - | - | |
Stsc120902g00025 | 509 | Pfam | C2H2-type zinc finger | 117 | 139 | - | - | |
Stsc120902g00025 | 509 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 5 | 508 | - | - | |
Stsc120902g00025 | 509 | MobiDBLite | consensus disorder prediction | 153 | 179 | - | - | |
Stsc120902g00025 | 509 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 11 | 38 | IPR013087 | - | |
Stsc120902g00025 | 509 | MobiDBLite | consensus disorder prediction | 386 | 401 | - | - | |
Stsc120902g00025 | 509 | SUPERFAMILY | beta-beta-alpha zinc fingers | 8 | 38 | IPR036236 | - | |
Stsc120902g00025 | 509 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 447 | 469 | IPR013087 | - | |
Stsc120902g00025 | 509 | Gene3D | Classic Zinc Finger | 3 | 68 | - | - | |
Stsc120902g00025 | 509 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 117 | 137 | IPR013087 | - | |
Stsc120902g00025 | 509 | MobiDBLite | consensus disorder prediction | 402 | 416 | - | - | |
Stsc120902g00025 | 509 | Coils | Coil | 424 | 444 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc120902g00025 | Stsc-Chr120902 | 102358 | 104235 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc120902g00025 | 2 | 509 | C2H2 Transcription Factor Family | AT1G26610 | 37.011 | 1.09e-67 | 223 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Stsc120902g00025 | zf-C2H2_6 | 1.3e-09 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc120902g00025 | - | - | aip:107634772 | 734.561 |