Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120902g00025 ATGATGATGATGATGGAGGAGAGGAAGAAGTTTGTGTGCAAGTATTGCAGCAAGAGGTTCCCATGTGGCAAGTCTCTTGGTGGTCACATCAGGACCCACATCACTGAAGAAAGAACAGCCATCAATGCCTCTTCTAATTCTCCCATTGCTGCTGCTGCTGCTACTCATGATCTTCTTCTCAAGAAGAAGAGGAAGAGGGATTCACCATGGCCTACTCATCAATCTGGACCTGCTGCTAACAATAATTATGGCCTTAGAGAGAATCCCAAGAAGACAACAAGGTTTGTGCATATTGATGCTGCTGCTGCTGCTGCCACCAACTTGGCACGTGACAAGGAAGAAAGGTTCTGCAAGGAATGTGGGAAAGGCTTTCCATCAATGAAAGCTCTTTGTGGCCACATGGCTTGTCACTCTGACAAGGACAAAGACAGAGAGAAATTTGTGGTCATGGCTATGGATGATGATGATGATGATGATGGATATAGCCAATCTGATGCTGAGAGTTCTGGTGCTGCTTCATTGCTTCCAAGGAGGAGATCCAAGAGGATGATGAGGTTCAAGAACCTCAGACCCTTTTGTTCTTCTTCTCCTTCTGCTTCTGTCTCCGAGGTGGAGCAGCAGCAGGAGGAGCAAGAAGAGGTTGCTAGGATGCTCATGATGCTCTCAAGAGACTCCGGCTGCCGGAAAGGTCGATTGCCTTCTCTTACCGAGTCTTCTGATAACAATTCTGTTGTTCTGGACACCAATAAGGTTGCTGCTGTGGCTGTGAGTAATAATGGCAGCAGGAAGAACTTTGTGCCTAATGATTCAGATTCTGCTGTTGGGTCTCTGAGGAGTACTGGCCTCAAGAACAAAATGGTTGATTCATCAGATGTCTCAATGGATGAATTCAAAGGGTGGAATAAGAATGTTAAAGATAAAGACAAAGAGAGAAGAAGCAAATACAGTAGCAGTGTTGCTTTTGCTGCTACAGTTAAGGATTTGGAATATGAAACAACAGTAACTACTACAACTACTACAAGGAAGAAGTTTGATTTCAGAAAGAGAGCAAACTATGATTCTCTTATTCACACTTCAACTGAGGTTCCTATCAAGAGTAATGGAAAAGCTGGTTTTTCCAATGATGAATATGATGATTGTTCTTATGATTCAACAGAATATGATGATGTTGATGAAGATGAAGAGAGTGATGAGAACAGCACTGATACTGATTCATTTCCTGCTCCAAAGGCTCATAGCACTAAGGCCAGCACAAAGGGTAATAAGAGCAAGAAGAACATGAAGAATAAGAAGAAGAAGAAGAAGAAGAACAAGTTGAAGTTAAAGAAGAGCAAGGAACATGAATGTCCAATTTGCTACAAGATTTTCAAGTCAGGACAAGCATTAGGAGGACACAAAAGATCCCATTTCATTGGAGGTTCATCAGAAGAGAACACTTTGGTCATTAAGCAGCATCATGCTCCTCCTTCTTCTCTTGTCGTTCCTAATTGCCTAATTGATCTCAATCTTCCTGCTCCTGTTGATGACTAA 1530 0.4255 MMMMMEERKKFVCKYCSKRFPCGKSLGGHIRTHITEERTAINASSNSPIAAAAATHDLLLKKKRKRDSPWPTHQSGPAANNNYGLRENPKKTTRFVHIDAAAAAATNLARDKEERFCKECGKGFPSMKALCGHMACHSDKDKDREKFVVMAMDDDDDDDGYSQSDAESSGAASLLPRRRSKRMMRFKNLRPFCSSSPSASVSEVEQQQEEQEEVARMLMMLSRDSGCRKGRLPSLTESSDNNSVVLDTNKVAAVAVSNNGSRKNFVPNDSDSAVGSLRSTGLKNKMVDSSDVSMDEFKGWNKNVKDKDKERRSKYSSSVAFAATVKDLEYETTVTTTTTTRKKFDFRKRANYDSLIHTSTEVPIKSNGKAGFSNDEYDDCSYDSTEYDDVDEDEESDENSTDTDSFPAPKAHSTKASTKGNKSKKNMKNKKKKKKKNKLKLKKSKEHECPICYKIFKSGQALGGHKRSHFIGGSSEENTLVIKQHHAPPSSLVVPNCLIDLNLPAPVDD 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120902g00025 509 ProSitePatterns Zinc finger C2H2 type domain signature. 13 33 IPR013087 -
Stsc120902g00025 509 ProSitePatterns Zinc finger C2H2 type domain signature. 449 469 IPR013087 -
Stsc120902g00025 509 SUPERFAMILY beta-beta-alpha zinc fingers 116 469 IPR036236 -
Stsc120902g00025 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 142 IPR013087 -
Stsc120902g00025 509 MobiDBLite consensus disorder prediction 417 442 - -
Stsc120902g00025 509 MobiDBLite consensus disorder prediction 73 87 - -
Stsc120902g00025 509 SMART c2h2final6 115 137 IPR013087 -
Stsc120902g00025 509 SMART c2h2final6 11 33 IPR013087 -
Stsc120902g00025 509 SMART c2h2final6 447 469 IPR013087 -
Stsc120902g00025 509 MobiDBLite consensus disorder prediction 386 443 - -
Stsc120902g00025 509 MobiDBLite consensus disorder prediction 63 87 - -
Stsc120902g00025 509 Pfam C2H2-type zinc finger 11 33 - -
Stsc120902g00025 509 Pfam C2H2-type zinc finger 447 469 - -
Stsc120902g00025 509 Pfam C2H2-type zinc finger 117 139 - -
Stsc120902g00025 509 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 5 508 - -
Stsc120902g00025 509 MobiDBLite consensus disorder prediction 153 179 - -
Stsc120902g00025 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 11 38 IPR013087 -
Stsc120902g00025 509 MobiDBLite consensus disorder prediction 386 401 - -
Stsc120902g00025 509 SUPERFAMILY beta-beta-alpha zinc fingers 8 38 IPR036236 -
Stsc120902g00025 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 447 469 IPR013087 -
Stsc120902g00025 509 Gene3D Classic Zinc Finger 3 68 - -
Stsc120902g00025 509 ProSitePatterns Zinc finger C2H2 type domain signature. 117 137 IPR013087 -
Stsc120902g00025 509 MobiDBLite consensus disorder prediction 402 416 - -
Stsc120902g00025 509 Coils Coil 424 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120902g00025 Stsc-Chr120902 102358 104235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120902g00025 2 509 C2H2 Transcription Factor Family AT1G26610 37.011 1.09e-67 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc120902g00025 zf-C2H2_6 1.3e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120902g00025 - - aip:107634772 734.561