Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120902g00018 ATGTCTGCCGAGAAGGAGAGAGAGACTCAGGTTTACCTGGCCAAGCTTTCTGAGCAGGCCGAAAGATATGAAGAGATGGTAGAATGCATGAAGACAGTGGCAAAGCTGGATCTGGAACTAACAGTGGAAGAGAGGAACCTGCTTTCAGTTGGATACAAGAACGTGATTGGTGCAAGAAGAGCTTCATGGCGCATCATGTCTTCCATTGAACAGAAGGAAGAGTCCAAAGGCAATGAGACCAACGTCAAGATCATTAAGGGTTACCGCCAAAAGGTTGAGGAGGAGCTTTCCAAGATCTGCAGTGATATTCTCGACATCATCGACAACCATCTCATTCCTTCTTCCCACTCTGGAGAAGCCACTGTTTTCTACTACAAGATGAAAGGTGACTACTATCGTTACCTTGCTGAGTTCAAGACGGAGCAAGAACGGAAAGAGATTGCGGAGCAGTCACTCAAGGCTTACGAGGCTGCTTCAGCAACTGCAAACTCAGATCTTCCGTCAACACATCCAATCCGCCTTGGACTCGCGCTCAACTTTTCGGTGTTTTATTATGAGATCATGAACTCTCCTGAAAGGGCTTGTCATTTGGCAAAACAAGCATTCGATGAGGCAATTGCTGAGTTGGACACCTTGAGTGAAGAGTCATACAAAGATAGCACTTTGATCATGCAATTGTTGAGAGACAACCTCACTCTCTGGACCTCCGATTTGCCTGAAGATGGAGGTGAAGAATTCAAACCAGTAGAAGAAGCAGTAAAACCTGCAGAACCTGAGTCCTAA 783 0.4598 MSAEKERETQVYLAKLSEQAERYEEMVECMKTVAKLDLELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNETNVKIIKGYRQKVEEELSKICSDILDIIDNHLIPSSHSGEATVFYYKMKGDYYRYLAEFKTEQERKEIAEQSLKAYEAASATANSDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEEFKPVEEAVKPAEPES 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120902g00018 260 PANTHER 14-3-3 PROTEIN 7 237 IPR000308 -
Stsc120902g00018 260 Coils Coil 13 33 - -
Stsc120902g00018 260 MobiDBLite consensus disorder prediction 240 260 - -
Stsc120902g00018 260 PIRSF 14-3-3 1 247 IPR000308 -
Stsc120902g00018 260 SUPERFAMILY 14-3-3 protein 6 237 IPR036815 -
Stsc120902g00018 260 MobiDBLite consensus disorder prediction 238 260 - -
Stsc120902g00018 260 Coils Coil 195 215 - -
Stsc120902g00018 260 SMART 1433_4 7 248 IPR023410 -
Stsc120902g00018 260 Pfam 14-3-3 protein 13 235 IPR023410 -
Stsc120902g00018 260 ProSitePatterns 14-3-3 proteins signature 2. 217 236 IPR023409 -
Stsc120902g00018 260 PRINTS 14-3-3 protein zeta signature 88 112 IPR000308 -
Stsc120902g00018 260 PRINTS 14-3-3 protein zeta signature 119 141 IPR000308 -
Stsc120902g00018 260 PRINTS 14-3-3 protein zeta signature 154 180 IPR000308 -
Stsc120902g00018 260 PRINTS 14-3-3 protein zeta signature 208 237 IPR000308 -
Stsc120902g00018 260 PRINTS 14-3-3 protein zeta signature 39 68 IPR000308 -
Stsc120902g00018 260 PRINTS 14-3-3 protein zeta signature 181 207 IPR000308 -
Stsc120902g00018 260 ProSitePatterns 14-3-3 proteins signature 1. 45 55 IPR023409 -
Stsc120902g00018 260 Gene3D - 1 246 IPR036815 -
Stsc120902g00018 260 FunFam 14-3-3 protein epsilon 1 248 - -
Stsc120902g00018 260 Coils Coil 138 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120902g00018 Stsc-Chr120902 72454 74881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120902g00018 2 257 14-3-3 family AT1G26480 83.462 1.40e-160 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120902g00018 - K06630 vvi:100254211 456.062