Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120902g00007 ATGGTGGAATCCATACAGACAATGGACCCCGACATTTCGCGGTGGTTTGCGGAATTCCAACTCCGGAGTTCCGCTCCGGACTCTGTCGTCTCCAAAGTCCTCAAGTCCCTTAACCTCTCCAGAGTCGATCACAAACTTAAGAAAACATTTCTCCTCCGCATCCTCCGTTCCGAAATCAACAATGCCTCAATCACCGAAACCACTCTCGAAATAATCGAGCAACTCGAAGCGATTGACCCAAACGACGCCGTTCCAGTCTTCGATTTCATGCGCAAAGCCTACTGCTCCGTCGCCGTCGAGTGCACCGTCAAGTTCCTCTCCGCCACCTCTGACGGCATCGCCAGCACTGAGTACCTATCTGCCGTGGCGCGTATCTGGCGCTGCCGCGTGGTGGAGTTGGAGCGCCGCAAGAGCAAGCTGTTCTCCGACGAGATTGTGCAGTGGAGGAACGACATTGAGGCTGCAATTTTGGACTCTAGGGTTTTTGAGAGGTTAGCGAAGTTAAATACCCGATACGACGCCTTATCTGCGGTTAGGCTTTATCTTGAGAAAGTGTGGGAAACGATGGGTCCTTGTTTTCTTGAATCGTTAGCGGAAATGATATGGAAGGACAAAAAGAAGAATCACAATGAGAAAGGATTGGCAATTCGGGTTTTGGATCCGGTGCCAGAGACTGTAGCCGAAGGGTCTGGGAAAGATGCTTGCAGAAATTCCTCTGGTGCTGGACAGAGGAGGGATCATAGTGGCAATGAAAAGGAAAATGAAAATCATAATGAGAATGTGAATGACAATGATGGTGCACATTGGAATGAGGGTGTGGAGATGAATGGTGGACATGAGGGGAAGGAACAGATGGAGGAGAGAGCTAAAGGTTCTGTCGATGGCGATGGCACCAAGGAGCCTGCAAAGGGGGAGAAAGCAAGCGAGAAGGGCAATCCTCAACTTCGACGCAAGCTCCCTGCATTTATTAGATGCCATAAAGGAGTTAAAATATCTAGTGCTGAGGAATTGGGCACTGGAAATCCAAGGAGCAAAAATGGTACTGAGAAAGGTGTTGAAGATATATCTGAAGCTATTGGATCTAAACTTGCACAGAAAGGTATAAATCAAGAACAACCAATGGAAAACAAGAGTGGGGATGTAGATGTACCAAACTCAAATACTTGCGGGGTTAATGTCCTTTGTCAACCTAATGATGCTGAGAAGAAATCTGTTCATTATAGTAGAGTTCAAGTTCAGCATCCCAATTTTAGGAAGCAGAACATTACTGCTCATGAAAGGCCCAATTTTAGGAAGCAGAACATTACTGCTCATGAAAGTCCCAATTTGAGGGTGCAAAACCGTACTGCTCATGAAAGTCCCAATTTGAGGGAGCAGAACATTACTGCTCATAGTGATGAGGGGAATAATTCAAAAGATGACTTGCCCAGTGGAGTGCAGCTGAGAAGGAAGAAAAGGAAATGGTCTTCATTGGAAGAGGAGACACTAATAACTGCTGTAAAAACGTATGGCGTAGGAAACTGGGCAACAATTCAGAGTTTCTACAAGAATATATTTCAAAATAGAACAGCAGTTGATTTGAAGGACAAATGGAGAAATATGATGCGGTAG 1611 0.46 MVESIQTMDPDISRWFAEFQLRSSAPDSVVSKVLKSLNLSRVDHKLKKTFLLRILRSEINNASITETTLEIIEQLEAIDPNDAVPVFDFMRKAYCSVAVECTVKFLSATSDGIASTEYLSAVARIWRCRVVELERRKSKLFSDEIVQWRNDIEAAILDSRVFERLAKLNTRYDALSAVRLYLEKVWETMGPCFLESLAEMIWKDKKKNHNEKGLAIRVLDPVPETVAEGSGKDACRNSSGAGQRRDHSGNEKENENHNENVNDNDGAHWNEGVEMNGGHEGKEQMEERAKGSVDGDGTKEPAKGEKASEKGNPQLRRKLPAFIRCHKGVKISSAEELGTGNPRSKNGTEKGVEDISEAIGSKLAQKGINQEQPMENKSGDVDVPNSNTCGVNVLCQPNDAEKKSVHYSRVQVQHPNFRKQNITAHERPNFRKQNITAHESPNLRVQNRTAHESPNLREQNITAHSDEGNNSKDDLPSGVQLRRKKRKWSSLEEETLITAVKTYGVGNWATIQSFYKNIFQNRTAVDLKDKWRNMMR 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120902g00007 536 SMART sant 484 536 IPR001005 -
Stsc120902g00007 536 ProSiteProfiles Myb-like domain profile. 480 535 IPR001005 -
Stsc120902g00007 536 Gene3D - 488 536 - -
Stsc120902g00007 536 MobiDBLite consensus disorder prediction 225 315 - -
Stsc120902g00007 536 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 482 536 IPR017930 -
Stsc120902g00007 536 SUPERFAMILY Homeodomain-like 482 535 IPR009057 -
Stsc120902g00007 536 MobiDBLite consensus disorder prediction 245 264 - -
Stsc120902g00007 536 MobiDBLite consensus disorder prediction 365 384 - -
Stsc120902g00007 536 Pfam Myb-like DNA-binding domain 485 534 IPR001005 -
Stsc120902g00007 536 CDD SANT_TRF 486 536 - -
Stsc120902g00007 536 MobiDBLite consensus disorder prediction 275 313 - -
Stsc120902g00007 536 MobiDBLite consensus disorder prediction 427 466 - -
Stsc120902g00007 536 MobiDBLite consensus disorder prediction 420 484 - -
Stsc120902g00007 536 PANTHER MYB TRANSCRIPTION FACTOR 8 536 - -
Stsc120902g00007 536 MobiDBLite consensus disorder prediction 467 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120902g00007 Stsc-Chr120902 17198 20361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120902g00007 488 535 Single Myb Histone (SMH) Gene Family AT1G15720 45.833 5.76e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc120902g00007 Myb_DNA-binding 8.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120902g00007 - - adu:107476251 572.392