Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120902g00003 ATGTCTGCTCCCAAGGAGAAGAAGCCTAAACAGTCCAAAACCGTTTCTCACCCTCCATATTTTCAGATGATTAAGGAGGCGTTGGTGGCTCTGAACGAGAAAGGTGGTTCGAGCCCTCACGCGATAGGCAAGTACATGGAGGAGAAGCACAAGGCGGTGCTGCCTGCGAATTTCAGGAAGATTCTTGCGTTGCAGCTCAAGAATCAAGCAACCAAAGGAAACCTCCTCAAGATCAAGGCCTCCTACAAGCTCTCCGCTGCCGCCAAGAAGGACACCTCTGCCCCCACCAAGGCCATGGAGAAGAAGAAGCAGAGCCGCTCCGTGAAGAAGACAAAGAAGGTGTCAACGCCGGCGAAACCGAAGCAACCAAGGTCGCTTAAGTCTCCGGCAAAGAGGAGCAGGAAGGGCACTGCTGCTGCCTGA 423 0.5366 MSAPKEKKPKQSKTVSHPPYFQMIKEALVALNEKGGSSPHAIGKYMEEKHKAVLPANFRKILALQLKNQATKGNLLKIKASYKLSAAAKKDTSAPTKAMEKKKQSRSVKKTKKVSTPAKPKQPRSLKSPAKRSRKGTAAA 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120902g00003 140 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 16 86 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc120902g00003 140 SUPERFAMILY "Winged helix" DNA-binding domain 13 95 IPR036390 -
Stsc120902g00003 140 CDD H15 14 97 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc120902g00003 140 PRINTS Histone H5 signature 3 24 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc120902g00003 140 PRINTS Histone H5 signature 30 47 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc120902g00003 140 PRINTS Histone H5 signature 112 126 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc120902g00003 140 Pfam linker histone H1 and H5 family 17 83 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc120902g00003 140 SMART h15plus2 14 81 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc120902g00003 140 MobiDBLite consensus disorder prediction 103 117 - -
Stsc120902g00003 140 PANTHER HISTONE H1 3 134 - -
Stsc120902g00003 140 MobiDBLite consensus disorder prediction 86 140 - -
Stsc120902g00003 140 Gene3D - 10 91 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120902g00003 Stsc-Chr120902 10810 11586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120902g00003 2 84 Single Myb Histone (SMH) Gene Family AT1G72740 36.145 3.97e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120902g00003 K11275 - gmx:100500169 180.644