Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120901g00021 ATGCTATCTCGATCTTGCTTAGGGCTATTGAATTTGGTATCGGTCGATGATTACCAGGCACTGAGCCGCATACCTACCCTCATGGCGCTTCCCACCCGGGACTCATACCAGATCAACCGCGACACCGCCGGATCCGACGACGCCGTTACCCCTCCCCCTCAAGAACGAAGAATCATCGTTGCCAACCAGCTCCCTATAAAAGCCACGCGCGATTCAGATACCAAGAAATGGATCTTCGACTACGACGCCGACAGCCTCTACCTCCAGCTCAAGGACGGCTTCCCCTCCGACGTGGAGGTCCTCTACGTGGGCTCCCTCAAGGCCGACGTCGACCCTTCCGAGCAGGACGAGGTGTCTCAGCTCCTCCTTGAGCGGTTCCGGTGCGTTCCCACCTTCCTCCCTTCGGAAATTCAGAACAAATTCTACCATGGATTCTGCAAGCACTATCTCTGGCCCCTGTTTCATTACATGCTTCCCATGTCTCCCAGCCACGGCGCCCGGTTCGACCGGGCCCAGTGGCAGGCCTACGTCCTCGCCAACAAGATCTTCGCCGATAAGGTGACGGAGGTCATAAACCCCGACGAGGATTTCGTGTGGGTTCACGATTACCACCTGATGATACTCCCCACTTTCTTGAGGAAAAGATTCCACCGCGTGAAGCTAGGGTTCTTCTTGCACAGCCCCTTCCCCTCTTCCGAAATCTACAGGACTCTACCCGTTCGTGATGACATACTCAGAGCCTTCTTGAACTGCGACCTCGTTGGCTTCCACACCTTCGATTACGCCAGGCACTTCTTGTCTTGCTGCAGCAGAATGCTTGGTTTGGACTACGAGTCTAAAAGAGGTTACATTGGTTTGGATTATTATGGAAGAACCGTCACCATCAAGATTTTGCCCGTTGGGATTCACATGGGCCAGCTTCGCTCCGTCTTGTCTCTGCCGCGCACCGCCAAGAGGGTGGAGGAGTTGAGGGTCGAGTATGAGGGCAAGGTTGTCATTCTTGGCGTTGATGACATGGACTTGTTCAAAGGTATCAGCTTGAAGTTCTTGGCAATGGGGCAGCTTCTTGAGGTTCATGAGGGCTTGAGAGGGAAGGTTGTTTTGGTTCAGATTCTGAATCCGGCAAGAAGCTCGGGGAAGGATATTCAAGACGTGAAGAGTGAGTCTGAGTCCATTGCTAAGGAGATTAACGAGAAATATGGCAGGCCAGGGTACCAGCCTATTGTGTTTGTGAATGGTCCAGTTTCAACGGAGGATAAGGCTGCTTACTATGCAATTTCTGAGTGTTGTGTGGTGAATGCCGTGAGGGATGGGATGAACTTGGTGCCTTACACTTACACTGTTTGCAGGCAGGGTCCTCTTGAGGATTCTGAGAGTGAGAGGCCTAAGCAGAGTGTTATCATTGTATCTGAGTTCATTGGTTGCTCTCCCTCCCTCAGCGGAGCAATCAGGGTGAACCCTTGGAACATTGATGATGTCTCTGAGGCTATGAACTCCGCCATCACAATGCCGGAGGGGGAGAAGCACTTGCGCCACGAGAAGCATTACAAGTACATAAGCTCCCATGATGTGGCCTATTGGGCTAGGAGTTTTGATCAGGATTTGGAGAGGGCTTGTAGGGAGCACTACCTCAAGAGGTATTGGGGTGTTGGTTTTGGTCTTGGTTTCAGGATTGTTGCCTTGGATCCTACCTTTAGGAAGCTCTCAGTCGATAACATTGTCTCTGCATACAAAGATACACACAACCGCTTGATTCTCTTGGACTATGATGGCACTATGTTGCCTCAGGCATCCATAAACAAGACCCCAAGCCCTGAGGTTATCTCTGTATTGAACTATTTATGCAGTGATCCCAAGAATATGGTGTTCATTGTCAGTGGCAGAGACAAGGATTGCCTCAGCAAGTGGTTTGATCCTTGTGAGAAGTTGGGCCTCTCTGCAGAACATGGTTACTTCACTAGGTTGAGGAGGGATACTCGTTGGGAGACATGCGGGTTGACAACTGATTTTGACTGGAAGAAGATGGCAGAACCTGTGATGGCGCATTACACAGAGGCAACGGATGGTTCTTTCATTGAACACAAGGAGAGTGCAATGGGTGTGAGCAAAGGTATAGTTGTGGAGAATCTAATCTCAAGCATGAGGAGTGAGGGTAAATCACCAGATTTTCTGTTGTGCATAGGGGATGATCGATCAGATGAAGACATGTTCGAAAGCATTGCTCGTTCAGTTTCTAATCCAGCACTTCCAACAATATCACAAGTGTTTGCGTGCACGGTTGGCCAGAAGCCAAGCATGGCAAAGTACTATTTAGAGGATACCAGTGAAGTTATCAAGTTGCTACAAGGTCTTGCTACTGCCTCAGAACCTTCAGCTTTTCAGGAATCGCAACAAGGATCACTATAG 2406 0.5008 MLSRSCLGLLNLVSVDDYQALSRIPTLMALPTRDSYQINRDTAGSDDAVTPPPQERRIIVANQLPIKATRDSDTKKWIFDYDADSLYLQLKDGFPSDVEVLYVGSLKADVDPSEQDEVSQLLLERFRCVPTFLPSEIQNKFYHGFCKHYLWPLFHYMLPMSPSHGARFDRAQWQAYVLANKIFADKVTEVINPDEDFVWVHDYHLMILPTFLRKRFHRVKLGFFLHSPFPSSEIYRTLPVRDDILRAFLNCDLVGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLDYYGRTVTIKILPVGIHMGQLRSVLSLPRTAKRVEELRVEYEGKVVILGVDDMDLFKGISLKFLAMGQLLEVHEGLRGKVVLVQILNPARSSGKDIQDVKSESESIAKEINEKYGRPGYQPIVFVNGPVSTEDKAAYYAISECCVVNAVRDGMNLVPYTYTVCRQGPLEDSESERPKQSVIIVSEFIGCSPSLSGAIRVNPWNIDDVSEAMNSAITMPEGEKHLRHEKHYKYISSHDVAYWARSFDQDLERACREHYLKRYWGVGFGLGFRIVALDPTFRKLSVDNIVSAYKDTHNRLILLDYDGTMLPQASINKTPSPEVISVLNYLCSDPKNMVFIVSGRDKDCLSKWFDPCEKLGLSAEHGYFTRLRRDTRWETCGLTTDFDWKKMAEPVMAHYTEATDGSFIEHKESAMGVSKGIVVENLISSMRSEGKSPDFLLCIGDDRSDEDMFESIARSVSNPALPTISQVFACTVGQKPSMAKYYLEDTSEVIKLLQGLATASEPSAFQESQQGSL 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120901g00021 801 CDD GT20_TPS 56 536 IPR001830 GO:0003824|GO:0005992
Stsc120901g00021 801 SUPERFAMILY HAD-like 583 785 IPR036412 -
Stsc120901g00021 801 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 56 540 - -
Stsc120901g00021 801 Gene3D - 582 798 IPR023214 -
Stsc120901g00021 801 FunFam Alpha,alpha-trehalose-phosphate synthase 310 520 - -
Stsc120901g00021 801 Pfam Trehalose-phosphatase 586 700 IPR003337 GO:0003824|GO:0005992
Stsc120901g00021 801 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 50 308 - -
Stsc120901g00021 801 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 696 797 - -
Stsc120901g00021 801 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 48 699 IPR001830 GO:0003824|GO:0005992
Stsc120901g00021 801 Gene3D Glycogen Phosphorylase B; 47 315 - -
Stsc120901g00021 801 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 582 695 - -
Stsc120901g00021 801 Gene3D Glycogen Phosphorylase B; 316 521 - -
Stsc120901g00021 801 Pfam Glycosyltransferase family 20 56 536 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120901g00021 Stsc-Chr120901 99721 103323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120901g00021 10 800 Trehalose Biosynthesis Gene Families AT2G18700 63.507 0.0 1100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120901g00021 K16055 - gmx:100810498 1339.32