Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120901g00018 ATGGCCATGATGTTTCCACACTTAGCTAAAGGAGACAGCTTTCTGTCTCCATCACAACAACAACCATCTTTTTTTCTTCATCACCCAAACCCACCACCACCACCAGCTGTTGTTCAATCTGATAGTTTCACCTTCGACGAGAAGGCCTTGAAGGTTAGTCCAAGCATACTCCTCATCATCATCATCCTGGCCATTGTTTTCTTCGTTTCTGGTTTGCTTCACCTCCTTGTTAGGTTCCTATGGAGGCCTCGGAGTAGAGACCCTGATGATTTTGACAATGGCACTGCACTTCAAGGCCAATTGCAGCAACTCTTCCATCTCCATGATGCTGGTGTTGATCAGTCCTTCATAGACACTCTCCCTGTCTTCCACTACAAAGCCATCATAGGCTTGAAGAACCCCTTTGACTGTGCCGTTTGTTTGTGTGAGTTTGAACCAGAAGACAAGCTTAGATTGTTGCCTAAATGTAGCCATGCTTTTCACATGGAGTGCATTGACACATGGCTTCTATCTCATTCTACTTGTCCTCTCTGTAGAGCTAGCTTGCTCCCTGATTTCTCTTCTAACAACACCAACAACACGTGTTCCCCCATTGTTCTTGTGCTTGAATCCGGGAGTGAGAGTTCTAGGGAGATTATTGCTCCCGAAAGAGATACTTCTTCTGCTGCAGCTGTTGCAAGAACAAGCTCTGTCATAACATCAAATTCTCATGAATTCGGATCATCAACAAGGATTGATTTTCAAAACAAGTCAGGTGAGTTGACTTCTTCAGGTGACAGCAACAAAATTCTTAATCTTGATACAAATGGTGTGGAAAAAGTGGTGACTGTGAAGTTGGGCAAGTTTAGGAATGTTGATGGTGGTGGTGGTGGTGGAGAAGGAAGTAGTAGCAGCAACAACAATGTGGATGGAAGGAGGTGCTTCTCAATGGGGTCATTTGCTTATGTCATGGATGAGAGCTCTTCACTTCAGGTACCAATAAGAACTCCAATGAAGAAGAAGCAGTCAAGTAGTAATAAGAAGAGTTGTTTGCCTTTGACACCAGGGCACAGGCCTGCAATGTCAGAATGTGACTCTGAATCCAGAAGAGATTTCAGATTTGCATGCTTTGATGCCACTAAAATTGAGGATCTTGGTGGTGCTGAAAGTAGTAATGGGGCTGCAATTGGAAGGAACAGAAAAGAGAGCTTCTCTATATCAAAGATTTGGCTGAGAGGGAAGAAGGAGGAGAAGCAAAATGAAGTTGGACATTCATCCAGAAGAGCATTTTCGTTCCGGTTTCCGGCTTCACAGAAGAACGGTGTTGGTGGTGGTGGTAGTGGTTGTTCAGAAGAGATAAAGGGTAATAAGAATGTGAAATTTGATACAAGTAGTACAATCTCAGAGATGGATATTGCTAAATGGGAGAATGGAGGGAGTGAATATGGGTTTGATGAGGAAAGCCAAAGCTGCAATAGCATTGATTCTCAAGCTAGAGCACCTTCATTTGCTACAAGGACTTTGCTTTGGCTCACTGGAAGACAGAACAAGGTTGTTCACTCTTCTTCTCATTCCAACATCTAG 1563 0.4357 MAMMFPHLAKGDSFLSPSQQQPSFFLHHPNPPPPPAVVQSDSFTFDEKALKVSPSILLIIIILAIVFFVSGLLHLLVRFLWRPRSRDPDDFDNGTALQGQLQQLFHLHDAGVDQSFIDTLPVFHYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPDFSSNNTNNTCSPIVLVLESGSESSREIIAPERDTSSAAAVARTSSVITSNSHEFGSSTRIDFQNKSGELTSSGDSNKILNLDTNGVEKVVTVKLGKFRNVDGGGGGGEGSSSSNNNVDGRRCFSMGSFAYVMDESSSLQVPIRTPMKKKQSSSNKKSCLPLTPGHRPAMSECDSESRRDFRFACFDATKIEDLGGAESSNGAAIGRNRKESFSISKIWLRGKKEEKQNEVGHSSRRAFSFRFPASQKNGVGGGGSGCSEEIKGNKNVKFDTSSTISEMDIAKWENGGSEYGFDEESQSCNSIDSQARAPSFATRTLLWLTGRQNKVVHSSSHSNI 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120901g00018 520 CDD RING-H2_EL5-like 136 179 - -
Stsc120901g00018 520 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Stsc120901g00018 520 MobiDBLite consensus disorder prediction 327 357 - -
Stsc120901g00018 520 FunFam RING-H2 finger protein ATL46 99 184 - -
Stsc120901g00018 520 SUPERFAMILY RING/U-box 116 189 - -
Stsc120901g00018 520 SMART ring_2 137 178 IPR001841 -
Stsc120901g00018 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 184 IPR013083 -
Stsc120901g00018 520 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 51 403 - -
Stsc120901g00018 520 MobiDBLite consensus disorder prediction 327 344 - -
Stsc120901g00018 520 Pfam Ring finger domain 136 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120901g00018 Stsc-Chr120901 77790 79693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120901g00018 71 520 C3H Transcription Factor Family AT2G18650 44.421 3.05e-100 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120901g00018 - - gmx:100797283 619.002