Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120901g00012 ATGCGAAATCAAAGTTCAGTGAAGCAAGAATTCCTGCGGAAATGGATAACAGGTCTTAGAAGATACAGCTGTGAGAAGAAGAACATGAGCTTCTTCGAGAGAAAGAAAGCCATAAAGCTCTCTGCAGATTTAGCCATGGCTTCCACCAGGGACAAAACCACACGCTGGAGCCAGGCTCTTATTGCCAACAACACCGACAACGTCTTCATAGCATCCTCATCCTCATCATCACCAAAGAAGAGCAGCAGCAGCAGAAGCAGAAACATGACGACGTTGATGAGAAGGAGTAGGCCAACAAGGGTGAAGAGCGCCAAGAAGGAGATGTCATCAGCGAGGTGCATCGCCAAGAGGTTGATGGAGAAGAGAACAAGAAAGCTGAAGAATCTTTTGCCAGGTGGAGAATCCATGGACGAGGGGTGTTTGGTTGCAGAAACCCTAGATTACATACAATCACTGAGAGATCAAATTGAAGTCATGAGATGCCTTGTCACTGCCTCACAACTCATCATAAATCCATCCTAA 522 0.4617 MRNQSSVKQEFLRKWITGLRRYSCEKKNMSFFERKKAIKLSADLAMASTRDKTTRWSQALIANNTDNVFIASSSSSSPKKSSSSRSRNMTTLMRRSRPTRVKSAKKEMSSARCIAKRLMEKRTRKLKNLLPGGESMDEGCLVAETLDYIQSLRDQIEVMRCLVTASQLIINPS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120901g00012 173 Coils Coil 101 121 - -
Stsc120901g00012 173 CDD bHLH_AtIBH1_like 111 163 IPR044549 GO:0006355
Stsc120901g00012 173 MobiDBLite consensus disorder prediction 71 97 - -
Stsc120901g00012 173 MobiDBLite consensus disorder prediction 71 106 - -
Stsc120901g00012 173 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 5 164 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120901g00012 Stsc-Chr120901 51372 52463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120901g00012 1 167 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30410 41.667 3.77e-31 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120901g00012 - - gmx:100814789 182.57