Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120901g00008 ATGGGTGTTTTGGATGAGAATCTTCCTGCACTGGCTATGATAGGGTTGCAGTTTCATTATGCAGCGCTTGCAATTTTCACCAGAGCTGCTCTGGTAGAAGGTTTGAGTCCAACTGTCTTTGTTGTTTACAGACAAGCCATTGCTACCTTAGCTTTGGCTCCTATGGTCTTTTCCCCTAACCGGATACAATCTTTCAAAGCTTCACTGAGTTCAAAGAGCTTCTTCTTGATGTTTGCTACCTCTCTTATTGGAGTAACAGCTAACCAGAATGCATATTTTCAAGGTCTATTCTATGCTTCTTCTACAGCAGCAACTGCAATGAGTAATCTCATACCTGCCTTAACTTTTGTCATAGCAACACTTGTTGGATTTGAGAAAATTGATCTGAAAAGCATGAGAAGTCTTGCAAAGATAGGAGGGACAGTTTGCTGCGTGAGTGGAGCCTTAACCATGGCGCTTCTGAAAGGACATAAGCTCTTAAACATGGACTACTTCCCTAATCATGCTGCCAAACACATCCTCACTGCAACAACTGCAGCTGATGACACCTGGCTCCTTGGCTGCCTATTGCTCCTAGCAAGTAGTGTTTTCTGGTCTTCTTGGATTATCATGCAGGTACCAATTTCTTCACGCTGCCCAGATCATTTGTTATCAACCTTTTGGATGTGTTTATTTGCAGCGGTTCAATCAGCCATATTTGCACTAGTCTATGAACAAGATCTAAAACCATGGAGTCTGCATTCTGGCCTAGAAGTTTCATGCTGTCTATATGCAGGAATTGGAATAGCAGTTAGTTTCTTGATTCAAACATGGTGTATCTCAGAAAGAGGTCCTCTGTACTGTGCAATGTTCAACCCTCTTGCAACAGTCATCACAGCTTTCATTTCTACTACATTCCTACAAGAACAGCTCTATGTTGGAAGCTTGATAGGAGCAATTGGAGTGATTATTGGTTTATATATTGTACTATGGGGAAAAGCCAAAGAGTATGAAGGAATGAAGCAGAAGAGAAGACAATCAAACTTGGAGGAAGGTGATGATGATGAGAATGTAATAAGAAGTACTAATAATGGTAGTAGCAAGATAGATCTAGAAGAACCACTTCTGACAGAGAAATCAGAAAGCATGATAGAACCGTGA 1140 0.4114 MGVLDENLPALAMIGLQFHYAALAIFTRAALVEGLSPTVFVVYRQAIATLALAPMVFSPNRIQSFKASLSSKSFFLMFATSLIGVTANQNAYFQGLFYASSTAATAMSNLIPALTFVIATLVGFEKIDLKSMRSLAKIGGTVCCVSGALTMALLKGHKLLNMDYFPNHAAKHILTATTAADDTWLLGCLLLLASSVFWSSWIIMQVPISSRCPDHLLSTFWMCLFAAVQSAIFALVYEQDLKPWSLHSGLEVSCCLYAGIGIAVSFLIQTWCISERGPLYCAMFNPLATVITAFISTTFLQEQLYVGSLIGAIGVIIGLYIVLWGKAKEYEGMKQKRRQSNLEEGDDDENVIRSTNNGSSKIDLEEPLLTEKSESMIEP 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120901g00008 379 Pfam EamA-like transporter family 186 323 IPR000620 GO:0016020
Stsc120901g00008 379 Pfam EamA-like transporter family 10 136 IPR000620 GO:0016020
Stsc120901g00008 379 MobiDBLite consensus disorder prediction 365 379 - -
Stsc120901g00008 379 MobiDBLite consensus disorder prediction 335 351 - -
Stsc120901g00008 379 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 154 - -
Stsc120901g00008 379 MobiDBLite consensus disorder prediction 335 379 - -
Stsc120901g00008 379 SUPERFAMILY Multidrug resistance efflux transporter EmrE 221 328 - -
Stsc120901g00008 379 PANTHER WAT1-RELATED PROTEIN 9 335 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120901g00008 Stsc-Chr120901 29805 31479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120901g00008 1 375 Nodulin-like Gene Family AT4G30420 45.238 4.83e-114 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120901g00008 - - gmx:100816384 490.345