Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120900g00013 ATGGAGGGGGAGGGTGGTTCAGAGGGAGAGAATAATCAGAAAAGAGGTGGCACAGATGATAATAGCAATGAGAATATCAATGGAAGCAATAGCAAAGTTGCGAATTCTAATGAGGGGCAGAGCAAGCCGAAGCGCCAGATGAAGACACCCTTTCAGCTCGAAACCCTCGAGAAAGCTTATGCCTTGGAGACGTACCCTTCTGAGGCTATGAGGGCTGAGCTGTCGGAGAAATTGGCGTTGTCTGATCGGCAGCTGCAGATGTGGTTCTGCCACCGGAGGCTGAAGGACAAGAAGGACTTGCCTCCCAAGAAGCCGCCAAAGAAGGCTGCTGAGAAGGTGCCGGAGCCGGAGCCTGAACCAGTGCCGGATTCCCCTGTGGATGACCACAGGTTGGGCCCTGAGCTAGGCAACGAGTATGGATCCGGGTCTGGTTCTGGGTCTAGCCCATTTACCCGGTCAGAGTCCCGGAGTGTGGCGCCCCAGGGTTATTATGAATCACAGCAGGCTGCGCTGGAGCTAAGAGCAATTGCTTGTGTAGAGGCACAGTTAGGGGGGCCATTGAGGGAAGATGGACCCATTCTAGGAGTAGAGTTTGATGCATTGCCACCGGATGCATTTGGGGCACCCTTAGGTACATTTAATCAGAGAACTTGTTTTCCTATTTTCACTTACAGAAAGACTGCATAA 687 0.524 MEGEGGSEGENNQKRGGTDDNSNENINGSNSKVANSNEGQSKPKRQMKTPFQLETLEKAYALETYPSEAMRAELSEKLALSDRQLQMWFCHRRLKDKKDLPPKKPPKKAAEKVPEPEPEPVPDSPVDDHRLGPELGNEYGSGSGSGSSPFTRSESRSVAPQGYYESQQAALELRAIACVEAQLGGPLREDGPILGVEFDALPPDAFGAPLGTFNQRTCFPIFTYRKTA 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120900g00013 228 MobiDBLite consensus disorder prediction 1 52 - -
Stsc120900g00013 228 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 21 210 IPR044977 GO:0006357
Stsc120900g00013 228 MobiDBLite consensus disorder prediction 96 161 - -
Stsc120900g00013 228 ProSiteProfiles 'Homeobox' domain profile. 39 99 IPR001356 GO:0003677
Stsc120900g00013 228 MobiDBLite consensus disorder prediction 96 134 - -
Stsc120900g00013 228 Pfam Homeodomain 42 98 IPR001356 GO:0003677
Stsc120900g00013 228 MobiDBLite consensus disorder prediction 140 161 - -
Stsc120900g00013 228 CDD homeodomain 44 93 IPR001356 GO:0003677
Stsc120900g00013 228 Gene3D - 26 100 - -
Stsc120900g00013 228 MobiDBLite consensus disorder prediction 18 48 - -
Stsc120900g00013 228 SMART HOX_1 41 103 IPR001356 GO:0003677
Stsc120900g00013 228 SUPERFAMILY Homeodomain-like 28 98 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120900g00013 Stsc-Chr120900 127428 128249 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120900g00013 4 211 Homeobox Transcription Factor Family AT1G28420 49.327 6.27e-56 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Stsc120900g00013 Homeodomain 3.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120900g00013 - - adu:107480767 333.569