Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120900g00008 ATGACATGGTGCAATAATAGGTCAGTTGTGGAGAGGGGAATCGAAATAATCAACCACCCCAATATCAATATTATTTCAATCCCTAGAAATAATAATAATGACAATAATAACAGTGTTGTTAGCGTTACTCACTCAAATAATCCTAGAACTGTTACTTGCCCCTCTTGTGGTCATAACATTCAATTACAAGATCAGGGTGGGATTCAAGACTTGCCAGGATTGCCAGCTGGAGTGAAATTTGATCCGAATGACCAAGAAATACTCGATCATTTGGATGCAAAAGTGCAGTCTGATGTGAGAAAGCTTCATCCTTTAATTGATGAGTTCATACCTACTCTTGAAGGCGAGAATGGAATTTGTTATACTCACCCAGAGAAGCTACCAGGAGTAAGCAAAGATGGACAAGTGCGTCACTTCTTTCACAGGCCTTCAAAGGCATACACAACTGGAACAAGGAAGAGAAGAAAGGTTCACACTGACGATGAAGGGAGCGAGACTAGGTGGCACAAAACTGGCAAAACCAGACCCATCTCGGTTGCTGGTTCAGTGAAGGGTTTCAAGAAGATACTTGTTCTCTACACCAACTATGGCAGGCAGAAGAAGCCCGAGAAGACCAACTGGGTCATGCATCAGTACCATCTCGGCTCCAACGAAGAAGAGAAAGACGGCGAGCTCGTCGTTTCAAAGGTTTTCTATCAAACACAGCCTCGTCAGTGCGGAAACTCCCTCATTAACAGTAACAAGGATGCTTATGATGATGAGAGATTATTGATGAGTCACCACCAGCGAAGTAGTGTTAACAACATTATCATTAATAACAGTGTGAATGACATTAGCATTGCCTTACCCAGGAACAGCAACAATAACAGTGCAGGTTTTGTGGATTATTATAATCCCGGCGGTTTCATGAATATGAATTATGAACATATGAACGAGACTACCTCACTGCCGCAACTGATTCCGAATATGGTGGTGCAAGGTGACACCTCTTCTTTCATTCGGTTAGCTGCTATGGATGCAAACAAGCCCAGGATGGACAGAAAATAG 1047 0.426 MTWCNNRSVVERGIEIINHPNINIISIPRNNNNDNNNSVVSVTHSNNPRTVTCPSCGHNIQLQDQGGIQDLPGLPAGVKFDPNDQEILDHLDAKVQSDVRKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGQVRHFFHRPSKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRPISVAGSVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSNEEEKDGELVVSKVFYQTQPRQCGNSLINSNKDAYDDERLLMSHHQRSSVNNIIINNSVNDISIALPRNSNNNSAGFVDYYNPGGFMNMNYEHMNETTSLPQLIPNMVVQGDTSSFIRLAAMDANKPRMDRK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120900g00008 348 Pfam No apical meristem (NAM) protein 75 214 IPR003441 GO:0003677|GO:0006355
Stsc120900g00008 348 Gene3D NAC domain 83 237 IPR036093 GO:0003677|GO:0006355
Stsc120900g00008 348 ProSiteProfiles NAC domain profile. 74 233 IPR003441 GO:0003677|GO:0006355
Stsc120900g00008 348 SUPERFAMILY NAC domain 69 233 IPR036093 GO:0003677|GO:0006355
Stsc120900g00008 348 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 33 264 IPR044799 GO:0003700
Stsc120900g00008 348 FunFam NAC domain-containing protein 73 83 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120900g00008 Stsc-Chr120900 52476 55772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120900g00008 1 246 NAC Transcription Factor Family AT4G28500 67.600 2.98e-123 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc120900g00008 NAM 8.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120900g00008 - - gmx:100795920 447.973