Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120900g00001 ATGGCGGGTTTGATTGATCTCAACACCACGGAGGACGATGAAACGCCGTCTTATGGATCCTACGCTGCTTCTTCATCTTCTTCTTCCTCGCACTCGGGAACAAGCACTGCTTCTGCTCCAGCTCCAGTTGCTCCCGGTTCTTCTTCTTCTTCTTCGGTGTGTTTGGAGCTGTGGCACGCGTGTGCAGGCCCAATGATCTCGTTGCCGAAGAAGGGAACCCTTGTTGTGTACTTCCCACAGGGACACTCTGAGCAGCAACTTCACGATTTTCCTCTCACTAACAACAATAACACCATCCCACCCCATGTCTTCTGTCGCGTTCTTGATGTTAAGCTCCATGCAGAAGAAGGGAGTGATGAAGTGTATTGCCAGGTTTTTCTTGTTCCTGAAAATGAGGAAGTACAGCGGAAATTTCGCGAAGGGGAAATTGAGGCTGAAGAGGAGGACACGGATGCTGTGATGAAGGCAACAACACCCCACATGTTTTGCAAGACTCTGACAGCTTCTGATACTAGCACTCATGGTGGATTCTCTGTTCCGCGTCGAGCAGCTGAAGATTGCTTTCCTCCCCTGGATTATAGTCAACAGAGGCCTTCCCAAGAGCTTGTAGCAAAGGATCTGCATGGCCGGGAATGGAAGTTTCGACATATTTACAGGGGGCAGCCGCGAAGGCATTTGCTTACCACCGGATGGAGTGCATTTGTGAACAAGAAGCGCCTTGTATCTGGAGATGCTGTACTGTTTCTTAGGGGTGAGGATGGTGAACTGAGACTGGGAATTCGTAGGGCAGCTCAATTGAAAAGTGATGGTAAATTTTCAGTTCTGCCTCCCCAGCAATTGAATCATAGCACTCTTGTCGACGTAATTAATGCTTTGTCTTCAAGATGTGCCGTCAGCATTCACTATAACCCAAGGTTCAGTTCATCTGACTTCATCATCCCTGTCCACAAATTCTGGAAGAGCCTTGATTATTCTTATTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAAACCGAAGATGCTGCAGAACGAAGAATCACAGGATTAATTATTGGGATTAATGATGTTGATCCTGTTAGATGGCCTGGGTCAAAATGGAGATGCCTGCTGGTAAGGTGGGATGACTTAGAAACCACAAGGCATAATAGGGTTTCTCCATGGGAGATTGAGCCATCGGGTTCTGCTTCCACTGCCAGTAGCCTGATGACAGCTGGTTTGAAGAGGAGCAAGATTGGATTGCCTTCAGCCCAGCTAGAATTTCCAGTTCCCACAGATGGGATCAGTACATCAGACTTTGGGGAATCGCTAAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATAATCATGTCAATGGTTTTAATGCTCAGTGTCACCAATTATCGGAACTAAGAAGGTGCTATCCTGGTACAACCTATCCTGGATTTACCACAGCAGGACATGGTACAATCCCACAGGTGAGTTCCGATGGTTCCTGCAATGGCACAGGCTTTGGTGAATCTTTCCGATTCCAAAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATATGGAAGAGCCTTGTCTCTTGACGAGGCTTATGGAAATGGTCGCCTAGGAGCTTTTGATGGTTACCAGATGCTAAGATCCAGAAATGGGTGGTCTGCGCATATGAATAACAATTCTTCTCATTTGCATGCACCGTTTCCGTCTGGTCAAGTGTCGTCTCCATCATCCGTGTTGATGTTCCAGCAAGCGTTTAATCCGGTTTCGAACTCTGATTATAAAAACCAAGCTAATCAGATGAAGGGAGGTAAAGCACTTCAACGAGGTTCATATGCTTCCAAAGTTAATGGTGCAACAACTGCTTCCTTCCCATCTTATGAGACAACTTTCCGAGGGAAAGGTGAGGAAGGAAAAAATTCTTTCACTTTCTTAAATCTGCATGATCAGTTGGGCAGTTCACGATTGCCTGATTCGAGATCAGAGCCGGGAGGAAGTCAAGAGTTGGTTTCTTCATGCAAAAGCAACTGCAGAGTCTTTGGTTTTTCACTTACCGAGGGTGCTACGGTTGCAAATGAAGAGACTGACCCCTCTAGAGTCACTTGTCAATTAAGTTCTGGTCCTTCTTTTACAAGACATTGCCAATGA 2145 0.4625 MAGLIDLNTTEDDETPSYGSYAASSSSSSSHSGTSTASAPAPVAPGSSSSSSVCLELWHACAGPMISLPKKGTLVVYFPQGHSEQQLHDFPLTNNNNTIPPHVFCRVLDVKLHAEEGSDEVYCQVFLVPENEEVQRKFREGEIEAEEEDTDAVMKATTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGREWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGEDGELRLGIRRAAQLKSDGKFSVLPPQQLNHSTLVDVINALSSRCAVSIHYNPRFSSSDFIIPVHKFWKSLDYSYSVGMRFRMRFETEDAAERRITGLIIGINDVDPVRWPGSKWRCLLVRWDDLETTRHNRVSPWEIEPSGSASTASSLMTAGLKRSKIGLPSAQLEFPVPTDGISTSDFGESLRFQKVLQGQEILGVNNHVNGFNAQCHQLSELRRCYPGTTYPGFTTAGHGTIPQVSSDGSCNGTGFGESFRFQKVLQGQEILPSQPYGRALSLDEAYGNGRLGAFDGYQMLRSRNGWSAHMNNNSSHLHAPFPSGQVSSPSSVLMFQQAFNPVSNSDYKNQANQMKGGKALQRGSYASKVNGATTASFPSYETTFRGKGEEGKNSFTFLNLHDQLGSSRLPDSRSEPGGSQELVSSCKSNCRVFGFSLTEGATVANEETDPSRVTCQLSSGPSFTRHCQ 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120900g00001 714 FunFam Auxin response factor 325 396 - -
Stsc120900g00001 714 SMART B3_2 162 264 IPR003340 GO:0003677
Stsc120900g00001 714 Gene3D - 325 399 - -
Stsc120900g00001 714 FunFam Auxin response factor 160 264 - -
Stsc120900g00001 714 MobiDBLite consensus disorder prediction 1 45 - -
Stsc120900g00001 714 Pfam Auxin response factor 289 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc120900g00001 714 CDD B3_DNA 160 262 IPR003340 GO:0003677
Stsc120900g00001 714 Gene3D - 160 264 IPR015300 -
Stsc120900g00001 714 ProSiteProfiles B3 DNA-binding domain profile. 162 264 IPR003340 GO:0003677
Stsc120900g00001 714 SUPERFAMILY DNA-binding pseudobarrel domain 156 275 IPR015300 -
Stsc120900g00001 714 MobiDBLite consensus disorder prediction 10 45 - -
Stsc120900g00001 714 Pfam B3 DNA binding domain 162 263 IPR003340 GO:0003677
Stsc120900g00001 714 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 51 688 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120900g00001 Stsc-Chr120900 10971 16255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120900g00001 161 519 B3 DNA Binding Superfamily AT2G33860 59.722 2.83e-144 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc120900g00001 B3 3.1e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120900g00001 K14486 - gmx:100808119 1017.68