Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120898g00021 ATGCCACTCTCAGAACTCATTGCTTCTTTACCAATCCACCCATCCAAAGCTACCTTCGTCCGCCGCTTGATGCGGATCTTGACACTTTCCGGCATCTTCTCTCAGCAAAATGATGATGAGCTTCCAGAAGAAGAGAGGTATGTGCTAACTAATGCATCTAGAATATTGCTTAAGGATCACCCTTTTTGCATGACACCATTCTTTCATGTGATTCTTGATCCAAAATTGTTAAAACCATGGTATCAACTCTCTAATTGGTTCAAGAAATGTGACACTAATATTTCACCATTCGAAACCGAACATGGGATGCCATTTTGGGAATTTATTACTATTCACGACCCAAAGATTGGTAATGGTTTCCAAGATGCCATGACAAGTGACTCTGGAGTGGTTTCTAGTGTGTTGGTTGACAAGTTTAAGGGTGTGTTTGAAGGGGTGGAATCTTTGGTTGATGTTGGTGGAGGGAATGGAACCATGGCTAAGACCATAGCTAAATCATTCCCACAAATGGAGTGCATAGTGTTTGATCTTCCAGAAGTTGTTGCTGGCTTGCAAGGAAATAGTGAGAACATGAAATATGTTGGTGGGGATATGTTTGAGGCAATTCCTGCTGCAGATGCTCTTTTGATGAAGTGCATATTACATGACTGGGATGATGAGGAATGTGTAAAACTCCTGAAGAAATGCAAAGAGGCAATAACGAACAAGGGCAAAAAAGGAAAGGTGATAATAATAGACATAGTGGTAGGGAATGAGAATGGAGATAAAGGATCATTGGAATTACAACTCCTCTTTGATATGGAGATGAAGGTGCTTGTCAACGGGAAGGAGAGAAATGAGAAAGAATGGGCCAACCTATTTTTCTCTTCTGGTTTCAATAATTATAAGATAATTCCAATTATGATGAGTTCAAGGTCCTTGATTGAGGTTTATCCATAG 939 0.4015 MPLSELIASLPIHPSKATFVRRLMRILTLSGIFSQQNDDELPEEERYVLTNASRILLKDHPFCMTPFFHVILDPKLLKPWYQLSNWFKKCDTNISPFETEHGMPFWEFITIHDPKIGNGFQDAMTSDSGVVSSVLVDKFKGVFEGVESLVDVGGGNGTMAKTIAKSFPQMECIVFDLPEVVAGLQGNSENMKYVGGDMFEAIPAADALLMKCILHDWDDEECVKLLKKCKEAITNKGKKGKVIIIDIVVGNENGDKGSLELQLLFDMEMKVLVNGKERNEKEWANLFFSSGFNNYKIIPIMMSSRSLIEVYP 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120898g00021 312 FunFam O-methyltransferase ZRP4 58 312 - -
Stsc120898g00021 312 Pfam O-methyltransferase domain 80 293 IPR001077 GO:0008171
Stsc120898g00021 312 SUPERFAMILY "Winged helix" DNA-binding domain 1 61 IPR036390 -
Stsc120898g00021 312 PIRSF O-mtase 1 312 IPR016461 GO:0008168
Stsc120898g00021 312 Gene3D Vaccinia Virus protein VP39 57 312 IPR029063 -
Stsc120898g00021 312 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 61 310 IPR029063 -
Stsc120898g00021 312 PANTHER O-METHYLTRANSFERASE 2 296 IPR016461 GO:0008168
Stsc120898g00021 312 Gene3D - 1 56 IPR036388 -
Stsc120898g00021 312 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 312 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120898g00021 Stsc-Chr120898 131140 134712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120898g00021 1 298 Monolignol Biosynthesis Gene Families AT5G54160 32.787 4.17e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120898g00021 - - gmx:100808134 378.637