Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120897g00015 ATGGGTCTTGATCACCATCCCAATCCCAACAACAATAACAATAATAACTCCTCCTCCTCAGGCCTCCAGCTTGTTCTAGGGTTATCTCTCACTACTACTACCACCGCAGAGGAAACCACCGCTACTCCACCTCCTCCGTCAACCAAACCAAAGCTCTGTTCCGGTGATGACACAACAGAGCCATCTCTAACGCTGGGTCTTTCCGGTGAGAGCTTCCACCAGCAGATTCTGAAAAGCAAGATGATGATTATGGATTCTGCTACTGGGCCTGGGAACAACAACAACAAATCAGGAGGTTATTGCGAGGAGCCTACAAGTGGTGAAATGTGTAGACAGGCTTCACCTCACGGCAGCGCAGTGTCGTCCTTCTCAAGTGGCGGCTGCAGGGTGGTGGCGGCGTGCGTCAAGAGAGAGAGGGATCTTAGTAGCTGTGAAGAGGCAGATGGTGATGGCGATGGCGAGAGAGTTTCTTCCAGAGTAAGCGATGAAGATGAAGACGGCACCAATGCCCGAAAGAAACTCAGGCTCACAAAGGAACAATCTGCTCTTCTTGAAGACAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTGGCCAGGCAGTTAAATCTGAGGCCTCGCCAAGTTGAAGTTTGGTTCCAGAATAGGAGAGCCAGAACGAAGCTGAAGCAGACGGAAGTGGACTGCGAGTTCTTGAAGAAATGCTGCGAAACATTGACGGACGAGAACAGAAGGCTAAAGAAGGAGCTACAAGAACTGAAGGCGCTGAAGCTCGCACAACCCCTCTACATGCCTATGCCGGCTGCAACACTCACCATCTGCCCCTCTTGTGAGAGGCTCAGCAACGACCCCCCTCCTTCCATTGCTCCAAAGCCTCACTTCTATAACCCCTTCACCAATCCTTCTGCAGCATGTTGA 930 0.5086 MGLDHHPNPNNNNNNNSSSSGLQLVLGLSLTTTTTAEETTATPPPPSTKPKLCSGDDTTEPSLTLGLSGESFHQQILKSKMMIMDSATGPGNNNNKSGGYCEEPTSGEMCRQASPHGSAVSSFSSGGCRVVAACVKRERDLSSCEEADGDGDGERVSSRVSDEDEDGTNARKKLRLTKEQSALLEDSFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLAQPLYMPMPAATLTICPSCERLSNDPPPSIAPKPHFYNPFTNPSAAC 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120897g00015 309 SMART HOX_1 169 231 IPR001356 GO:0003677
Stsc120897g00015 309 MobiDBLite consensus disorder prediction 1 42 - -
Stsc120897g00015 309 ProSitePatterns 'Homeobox' domain signature. 202 225 IPR017970 GO:0000981|GO:0006355
Stsc120897g00015 309 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 24 287 - -
Stsc120897g00015 309 SMART halz 227 270 IPR003106 GO:0006355|GO:0043565
Stsc120897g00015 309 ProSiteProfiles 'Homeobox' domain profile. 167 227 IPR001356 GO:0003677
Stsc120897g00015 309 SUPERFAMILY Homeodomain-like 161 228 IPR009057 -
Stsc120897g00015 309 MobiDBLite consensus disorder prediction 1 68 - -
Stsc120897g00015 309 FunFam Homeobox-leucine zipper protein 18 156 232 - -
Stsc120897g00015 309 Pfam Homeodomain 171 225 IPR001356 GO:0003677
Stsc120897g00015 309 Coils Coil 233 263 - -
Stsc120897g00015 309 Gene3D - 164 232 - -
Stsc120897g00015 309 MobiDBLite consensus disorder prediction 52 68 - -
Stsc120897g00015 309 Pfam Homeobox associated leucine zipper 227 261 IPR003106 GO:0006355|GO:0043565
Stsc120897g00015 309 CDD homeodomain 171 228 IPR001356 GO:0003677
Stsc120897g00015 309 MobiDBLite consensus disorder prediction 143 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120897g00015 Stsc-Chr120897 111611 113328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120897g00015 24 309 Homeobox Transcription Factor Family AT4G37790 54.194 1.16e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc120897g00015 Homeodomain 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120897g00015 K09338 - gmx:100795135 326.25