Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120897g00013 ATGGGAAGGGCACCTTGCTGTGATAAAGCGAACGTGAAGAAAGGGCCATGGTCTCCTGAAGAAGACGCCAAACTCAAGTCTTACATAGAGCAGAACGGTACCGGCGGTAACTGGATCGCCCTCCCTCAGAAGATAGGGCTTAAGAGATGTGGGAAAAGCTGTCGTCTTAGATGGCTGAATTATCTTCGCCCAAACATCAAACATGGCAGTTTCACAGAAGAAGAAGACAACATAATATGCACCCTGTATGTTAGTATTGGAAGCAGGTGGTCAATTATAGCAGCACAGTTACCAGGGCGCACTGACAATGACATCAAGAACTACTGGAACACTAGGCTCAAGAAGAAGCTCCTTGGCAACCAAAGGAAACACCAACACCCCCCTCCTCCTCAAAAGAGATCATCACCAATCATCACTACCACCCAACCTACTACTCCTTATTCTTCCTCCAATTCTTCTTCTGCCTCCGACAATTGTGTGCCCATGCCCCCACTAGTACCACCTGCTTCCATCCATGACTACGATTACAACACCCTCCACCACCAATACTCATCCCATGACACACAACAACATCTTTATCCAGCAACAATCAACAACACCACTTCCACTTCTCTGCCATCCAATAATAACATGTATGACCTACAGCAAGGGTTTGAAAACTTGACAGATGATGATCTCAGCCATCTCATGGCGTGTGTCATCGATAATCAGGAACAACAAATGCAAATGCAGCAGCAAGGTGGTTATTATGGGATGGGGATGGCGAGTGGAAGCAGCAACACCACTTCAACAGAGAGCACTACTACTGCTTGGGCACCACCTCCTTTGCTTTCTGTTTCTGATTACGAACTTGGTGGTGGCCATGCTTGTCGACAATCTATTATATCTCATTATCAACATGATGATGCTGTTGCTTTCCATCAGGAACCTGCTGCTTCTAGGTACTTTGGAATGCAAATGCTATGA 966 0.4617 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGSFTEEEDNIICTLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGNQRKHQHPPPPQKRSSPIITTTQPTTPYSSSNSSSASDNCVPMPPLVPPASIHDYDYNTLHHQYSSHDTQQHLYPATINNTTSTSLPSNNNMYDLQQGFENLTDDDLSHLMACVIDNQEQQMQMQQQGGYYGMGMASGSSNTTSTESTTTAWAPPPLLSVSDYELGGGHACRQSIISHYQHDDAVAFHQEPAASRYFGMQML 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120897g00013 321 Gene3D - 7 68 - -
Stsc120897g00013 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Stsc120897g00013 321 MobiDBLite consensus disorder prediction 135 159 - -
Stsc120897g00013 321 SMART sant 67 115 IPR001005 -
Stsc120897g00013 321 SMART sant 13 64 IPR001005 -
Stsc120897g00013 321 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Stsc120897g00013 321 Gene3D - 69 136 - -
Stsc120897g00013 321 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Stsc120897g00013 321 CDD SANT 16 62 IPR001005 -
Stsc120897g00013 321 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Stsc120897g00013 321 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Stsc120897g00013 321 MobiDBLite consensus disorder prediction 118 160 - -
Stsc120897g00013 321 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc120897g00013 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Stsc120897g00013 321 CDD SANT 70 113 IPR001005 -
Stsc120897g00013 321 FunFam Transcription factor RAX3 7 68 - -
Stsc120897g00013 321 PANTHER OS09G0431300 PROTEIN 1 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120897g00013 Stsc-Chr120897 86563 87995 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120897g00013 1 123 MYB Transcription Factor Family AT3G49690 91.057 2.96e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc120897g00013 Myb_DNA-binding 3.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120897g00013 K09422 - gmx:106795158 264.233