Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120897g00009 ATGAAGACCCTTCTAGATGCTGAGACCATTGCTAACTTCAACAATCAAAATAATAATATAGTAGGTGTTCCATCACAACTTCATCACCATCACCAAACACAACCTTCTTCTGCTTCTGTAGAAGCAGTTCCACCACCAAGCTTTTGCTGTTACTATGGAGTTGAAGCTGAAAATCTTGGATGGTATCCAGCACTCCCTATCTTGCCCCTTAAATCCGATGGCTCTCTCTTTGATATAGAAGCACTGAGCAGAGCTAAGGAACAAGGCATGGGAGTGGCAACTACTACTTCAGCACCAAAACTGGAGGATTTCTTTGGTTGCCAAAGCCAAGCAGCGGTGACTCCTGAATGCAACAACACCAGAGAAGTACTGCCTCTGAGCTATAACATGTTTCAAAATCCAAATTATCTAAATCATGTACAACAGAATATCAACTTGCTTCAGCATGATGTTAACCAGCAAAACTCATATTATTCTTCTGCATTAAGAAGCAACAACAATAACCATCATCAGGTGATGCTACAAGGATACAATATGGTTAAGGAGGAAGCTCCTGGTATACACCATGCAATGGAGGCAAAACTGGTTATTCCTTTGGAGGATAATAGAGGTGAATCTCTGTCCATTGGATCAGTGGCTTTCGGGGATTTACAGTCACTGAGGTTGTCCATGAGTCCAAGCTCTCAATCAAGTTGTGTCACAAGCTCACAACAAACACCACATGCTGTCATTGATTCTATCCCCATGAGTAGTACAAAGAAAAGGAGCCATGATGAAATGGTGGAGCAGAACCAGAACCAGAACCAGAAGCAGCAGCAAATTGTTCATAGAAAGTCTATTGATACCTTTGGCCAGAGAACTTCTCAATATAGAGGTGTTACAAGGCATAGGTGGACTGGGAGATATGAAGCTCATCTATGGGACAATAGTTGCAAGAAAGAGGGTCAGAGTAGGAAAGGAAGGCAAGTTTATCTAGGGGGATATGATATGGAAGAAAAAGCAGCGAGAGCTTATGATTTAGCTGCACTCAAGTATTGGGGACCCTCCACTCATATAAATTTCCCATTGGAAAATTATCAAAATGAACTTGTGCAAATGAAGAACATGACCAGGCAGGAATATGTTGCTCATTTGAGAAGAAAAAGCAGCGGATTCTCAAGAGGGGCTTCAATCTACAGAGGAGTAACAAGACACCATCAGCATGGAAGGTGGCAAGCCCGAATTGGAAGAGTGGCTGGAAACAAAGATCTATATCTTGGGACATTCAGTACCCAAGAGGAAGCAGCCGAAGCATACGACATTGCTGCTATAAAATTCCGAGGAGTTAATGCAGTAACTAACTTTGAAATAATCAGATACGATGTGGAAAAAATTATGGCAAGCAATGACCTTCTTACCATTGAACAAGCTAAGCGAAAAGGAGGAGAGGTCATTATCAATAATAATAATAACCATAAAGCATCTACATATGATGAAGACATTATTATTGAAATGCACAAGAGCTGCAAAAATCATCATCAGCTCATGATGATTAATCCACCAACAGTGGCTTTAGAGGAGGAATCAAGTAATAAGATTGTTGGAACACATATTTCAGATCCTTGTTCGCTTAATATTATTAGTGATGAAGATAAGACAAGTTTGGCACCAATTCTGTATGGAAGGCCTTCAACAACAGCAGCAGGCTCTAGATTACTGGCTACCATTCCAACCGGTTGGGACCAACAACCACCACCGCATCTCAGAGCTAATAAGATTTCCTTGCCTCACATGCCACTTTTTGCTGCATGGACAGACTCATAG 1803 0.4132 MKTLLDAETIANFNNQNNNIVGVPSQLHHHHQTQPSSASVEAVPPPSFCCYYGVEAENLGWYPALPILPLKSDGSLFDIEALSRAKEQGMGVATTTSAPKLEDFFGCQSQAAVTPECNNTREVLPLSYNMFQNPNYLNHVQQNINLLQHDVNQQNSYYSSALRSNNNNHHQVMLQGYNMVKEEAPGIHHAMEAKLVIPLEDNRGESLSIGSVAFGDLQSLRLSMSPSSQSSCVTSSQQTPHAVIDSIPMSSTKKRSHDEMVEQNQNQNQKQQQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELVQMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFEIIRYDVEKIMASNDLLTIEQAKRKGGEVIINNNNNHKASTYDEDIIIEMHKSCKNHHQLMMINPPTVALEEESSNKIVGTHISDPCSLNIISDEDKTSLAPILYGRPSTTAAGSRLLATIPTGWDQQPPPHLRANKISLPHMPLFAAWTDS 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120897g00009 600 MobiDBLite consensus disorder prediction 226 257 - -
Stsc120897g00009 600 FunFam AP2-like ethylene-responsive transcription factor ANT 288 357 - -
Stsc120897g00009 600 CDD AP2 390 450 IPR001471 GO:0003700|GO:0006355
Stsc120897g00009 600 SUPERFAMILY DNA-binding domain 390 449 IPR016177 GO:0003677
Stsc120897g00009 600 ProSiteProfiles AP2/ERF domain profile. 391 449 IPR001471 GO:0003700|GO:0006355
Stsc120897g00009 600 MobiDBLite consensus disorder prediction 226 250 - -
Stsc120897g00009 600 FunFam AP2-like ethylene-responsive transcription factor 390 451 - -
Stsc120897g00009 600 SMART rav1_2 391 455 IPR001471 GO:0003700|GO:0006355
Stsc120897g00009 600 SMART rav1_2 289 361 IPR001471 GO:0003700|GO:0006355
Stsc120897g00009 600 PRINTS Ethylene responsive element binding protein signature 290 301 IPR001471 GO:0003700|GO:0006355
Stsc120897g00009 600 PRINTS Ethylene responsive element binding protein signature 431 451 IPR001471 GO:0003700|GO:0006355
Stsc120897g00009 600 CDD AP2 288 355 IPR001471 GO:0003700|GO:0006355
Stsc120897g00009 600 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 95 488 - -
Stsc120897g00009 600 Gene3D AP2/ERF domain 391 451 IPR036955 GO:0003700|GO:0006355
Stsc120897g00009 600 Gene3D AP2/ERF domain 288 357 IPR036955 GO:0003700|GO:0006355
Stsc120897g00009 600 Pfam AP2 domain 391 441 IPR001471 GO:0003700|GO:0006355
Stsc120897g00009 600 Pfam AP2 domain 289 347 IPR001471 GO:0003700|GO:0006355
Stsc120897g00009 600 ProSiteProfiles AP2/ERF domain profile. 289 355 IPR001471 GO:0003700|GO:0006355
Stsc120897g00009 600 SUPERFAMILY DNA-binding domain 288 357 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120897g00009 Stsc-Chr120897 49405 52807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120897g00009 43 600 AP2-EREBP Transcription Factor Family AT4G37750 46.077 7.16e-152 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc120897g00009 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120897g00009 K09285 - gmx:100792451 580.096