Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120897g00008 ATGCTTTCTGCTATCTCTGCCTCCGACACTTTGCTCGGAAACCCTTTTGCCTCAGTGTTTGACTGCACTGACTTTTGCTTTGCCATTAAACCCACCAGCCCCAACCAGACCGCCATTACCAGTTCGAGCTCCGGTTCGGATGAACCCAACCAAAACCATGTAGAGGAAAAACCCGGTTCGGAGGCGGTTATGGACGACCGGAAACGGCGGAGAATGATATCGAACAGGGAATCGGCGAGGAGGTCACGGATGCGGAAGCAGAGGCACCTAGAGAACCTGCGGAACCAGTTGAAGGAGTCTAGAGTAGAAAACCAGGAGGTGAAGAACCGGTTGCGGTTTATTTTGCATCATTGTAACCGCCTGCGAACCGAAAACGATTGGCTAAGCTCTGAGAGAACCATGTTACGCCAGAAACTGTCGTACATGACTCAAATTTTGTTATTCCAACAACTTCAACCGCAATGA 465 0.5011 MLSAISASDTLLGNPFASVFDCTDFCFAIKPTSPNQTAITSSSSGSDEPNQNHVEEKPGSEAVMDDRKRRRMISNRESARRSRMRKQRHLENLRNQLKESRVENQEVKNRLRFILHHCNRLRTENDWLSSERTMLRQKLSYMTQILLFQQLQPQ 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120897g00008 154 Coils Coil 76 110 - -
Stsc120897g00008 154 FunFam BZIP transcription factor 65 116 - -
Stsc120897g00008 154 SUPERFAMILY Leucine zipper domain 67 122 IPR046347 GO:0003700|GO:0006355
Stsc120897g00008 154 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 65 128 IPR004827 GO:0003700|GO:0006355
Stsc120897g00008 154 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 70 85 IPR004827 GO:0003700|GO:0006355
Stsc120897g00008 154 CDD bZIP_plant_GBF1 68 119 IPR045314 GO:0003700|GO:0006355
Stsc120897g00008 154 PANTHER BZIP TRANSCRIPTION FACTOR 44 33 149 - -
Stsc120897g00008 154 Gene3D - 66 118 - -
Stsc120897g00008 154 MobiDBLite consensus disorder prediction 35 88 - -
Stsc120897g00008 154 Pfam bZIP transcription factor 66 125 IPR004827 GO:0003700|GO:0006355
Stsc120897g00008 154 MobiDBLite consensus disorder prediction 35 49 - -
Stsc120897g00008 154 MobiDBLite consensus disorder prediction 50 80 - -
Stsc120897g00008 154 SMART brlzneu 63 127 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120897g00008 Stsc-Chr120897 42249 42713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120897g00008 63 152 bZIP Transcription Factor Family AT2G22850 53.333 3.11e-25 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc120897g00008 bZIP_1 2.9e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120897g00008 - - ahf:112800711 179.874