Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120897g00002 ATGGTAGCTGGCTACGAGGGTGGAGGTGACGGCCAGATTCTGGATCTGGACACAGCGGTGAAGGACGGTGTCTTGGGCGGTGGAGGCGGCGGCGGAGTAGTGGGAGGAGTTACATGCGAGAAATTGGATCTGGGGAAGATGATTGAGGAGCTGGACTTGTCAGAGGTACCAAGCGTGTTCATATGCCCAATCTCCCTTGAAGCAATGCAAGACCCCGTGACTCTCTGCACCGGCCAAACCTACGAGCGCTCCAACATCTTGAAATGGTTCAGCATGGGTCACTTCACCTGCCCCACTACGATGCAGGAGCTTTGGGATGATTCTCTTACCCCTAACACCACCCTCTACCGCCTCATATACACTTGGTTCTCTCAGAAGTACCTTCTCATGAAGAAGAGGTCTGAGGATGTTCAGGGCAGGGCTTCTGAGCTTGTTGATACTCTCAAGAAGGTGAAGGGTCAGGCCCGGGTCATGGCTCTCAAGGAGCTTCACCACCTTGTTGCTGCTCACCCCACTGCCCGCAAGACTCTTCTTGATGAAGGTGGCGTTGCTGTAATGTCTTCTTTGCTTGGTCCTTTTACTTCCCATGCTGTTGGCTCTGAGGTTATTGCTATTCTTGTTTGCTTGACTCTTGATTCCGATTCCAAGAAGAATCTTATGCAGCCTGCTAAGGTTTCTTTGATGGTGGATATCCTCAATGAGGGCTCTATTGAGACCAAGATTAATTCCACTAGGTTGATTGAGTCACTGATTGATGACAAGGATCTTAGGTCAGAGCTTATCTCCAGCCATAGCTTGTTGGTTGGGTTGATGAGGCTTGTCAAGGATAAGAGGCACACCAATGGAATCTGCCCTGCCTTGAGCCTTTTAAGAGCAATTTGCTCCCACAAGGACATTAACATTAGGCATTTGATTGTTAGCATTGGTGCTGTTTCCCAATTGGTAGAATTGTTGTCTGGTTTGGACCCTGATTGTTTGGAATTGGCACTTTCTATCTTGGATTCATTGGCGTCTATACCCGAAGGCAGGCTCGCTTTGAAGAATTGTTCTAATACCATACCCATCATGGTCAAATTGTTGATGAGGATCTCTGAGAATTGCACCCAGTATGCCTTGTCCATATTGTGGTCTGTCTGCAAGCTTGCCCCGGAGGAGTGCTCCTCCGTTGCCGTCGACGCGGGGCTTGCTGCCAAACTCCTCCTTGTCATTCAGAGTGGGTGCAGTCCTATATTGAAACAACAGTCTGCTGAGCTTTTGAAGCTCTGCAGTTTGAATTATTCGGATACAATCTTCATTTCCAAGTGCAAGCTCACAAGAACCATCCTATAG 1329 0.4876 MVAGYEGGGDGQILDLDTAVKDGVLGGGGGGGVVGGVTCEKLDLGKMIEELDLSEVPSVFICPISLEAMQDPVTLCTGQTYERSNILKWFSMGHFTCPTTMQELWDDSLTPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELVDTLKKVKGQARVMALKELHHLVAAHPTARKTLLDEGGVAVMSSLLGPFTSHAVGSEVIAILVCLTLDSDSKKNLMQPAKVSLMVDILNEGSIETKINSTRLIESLIDDKDLRSELISSHSLLVGLMRLVKDKRHTNGICPALSLLRAICSHKDINIRHLIVSIGAVSQLVELLSGLDPDCLELALSILDSLASIPEGRLALKNCSNTIPIMVKLLMRISENCTQYALSILWSVCKLAPEECSSVAVDAGLAAKLLLVIQSGCSPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIL 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120897g00002 442 PANTHER WDSAM1 PROTEIN 51 428 IPR045185 GO:0061630
Stsc120897g00002 442 SUPERFAMILY ARM repeat 144 427 IPR016024 -
Stsc120897g00002 442 Pfam U-box domain 56 126 IPR003613 GO:0004842|GO:0016567
Stsc120897g00002 442 SMART Ubox_2 59 122 IPR003613 GO:0004842|GO:0016567
Stsc120897g00002 442 Gene3D - 284 423 IPR011989 -
Stsc120897g00002 442 CDD RING-Ubox_PUB 57 109 IPR045210 -
Stsc120897g00002 442 SUPERFAMILY RING/U-box 50 126 - -
Stsc120897g00002 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 136 IPR013083 -
Stsc120897g00002 442 Gene3D - 137 283 IPR011989 -
Stsc120897g00002 442 ProSiteProfiles U-box domain profile. 55 129 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120897g00002 Stsc-Chr120897 1399 4317 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120897g00002 4 441 U-box Gene Family AT3G49810 74.429 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120897g00002 - - adu:107487639 795.423