Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120897g00001 ATGCCAATGTTTCAGGGTTGCAAGAGGGACATGGTAGCTGGCTACGAGGGTGGAGGTGACGGCCAGATTCTGGATCTGGACACAGCGGTGAAGGACGGTGTCTTGGGCGGTGGAGGCGGCGGCGGAGTAGTGGGAGGAGTTACATGCGAGAAATTGGATCTGGGGAAGATGATTGAGGAGCTGGACTTGTCAGAGGTACCAAGCGTGTTCATATGCCCAATCTCCCTTGAAGCAATGCAAGACCCCGTGACTCTCTGCACCGGCCAAACCTACGAGCGCTCCAACATCTTGAAATGGTTCAGCATGGGTCACTTCACCTGCCCCACTACGATGCAGGAGCTTTGGGATGATTCTCTTACCCCTAACACCACCCTCTACCGCCTCATATACACTTGGTTCTCTCAGAAGTACCTTCTCATGAAGAAGAGGTCTGAGGATGTTCAGGGCAGGGCTTCTGAGCTTGTTGATACTCTCAAGAAGGTGAAGGGTCAGGCCCGGGTCATGGCTCTCAAGGAGCTTCACCACCTTGTTGCTGCTCACCCCACTGCCCGCAAGACTCTTCTTGATGAAGGTGGCGTTGCTGTAATGTCTTCTTTGCTTGGTCCTTTTACTTCCCATGCTGTTGGCTCTGAGGTTATTGCTATTCTTGTTTGCTTGACTCTTGATTCCGATTCCAAGAAGAATCTTATGCAGCCTGCTAAGGTTTCTTTGATGGTGGATATCCTCAATGAGGGCTCTATTGAGACCAAGATTAATTCCACTAGGTTGATTGAGTCACTGATTGATGACAAGGATCTTAGGTCAGAGCTTATCTCCAGCCATAGCTTGTTGGTTGGGTTGATGAGGCTTGTCAAGGATAAGAGGCACACCAATGGAATCTGCCCTGCCTTGAGCCTTTTAAGAGCAATTTGCTCCCACAAGGACATTAACATTAGGCATTTGATTGTTAGCATTGGTGCTGTTTCCCAATTGGTAGAATTGTTGTCTGGTTTGGACCCTGATTGTTTGGAATTGGCACTTTCTATCTTGGATTCATTGGCGTCTATACCCGAAGGCAGGCTCGCTTTGAAGAATTGTTCTAATACCATACCCATCATGGTCAAATTGTTGATGAGGATCTCTGAGAATTGCACCCAGTATGCCTTGTCCATATTGTGGTCTGTCTGCAAGCTTGCCCCGGAGGAGTGCTCCTCCGTTGCCGTCGACGCGGGGCTTGCTGCCAAACTCCTCCTTGTCATTCAGAGTGGGTGCAGTCCTATATTGAAACAACAGTCTGCTGAGCTTTTGAAGCTCTGCAGTTTGAATTATTCGGATACAATCTTCATTTCCAAGTGCAAGCTCACAAGAACCATCCTATAG 1359 0.4879 MPMFQGCKRDMVAGYEGGGDGQILDLDTAVKDGVLGGGGGGGVVGGVTCEKLDLGKMIEELDLSEVPSVFICPISLEAMQDPVTLCTGQTYERSNILKWFSMGHFTCPTTMQELWDDSLTPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELVDTLKKVKGQARVMALKELHHLVAAHPTARKTLLDEGGVAVMSSLLGPFTSHAVGSEVIAILVCLTLDSDSKKNLMQPAKVSLMVDILNEGSIETKINSTRLIESLIDDKDLRSELISSHSLLVGLMRLVKDKRHTNGICPALSLLRAICSHKDINIRHLIVSIGAVSQLVELLSGLDPDCLELALSILDSLASIPEGRLALKNCSNTIPIMVKLLMRISENCTQYALSILWSVCKLAPEECSSVAVDAGLAAKLLLVIQSGCSPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIL 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120897g00001 452 PANTHER WDSAM1 PROTEIN 61 438 IPR045185 GO:0061630
Stsc120897g00001 452 ProSiteProfiles U-box domain profile. 65 139 IPR003613 GO:0004842|GO:0016567
Stsc120897g00001 452 SUPERFAMILY RING/U-box 60 136 - -
Stsc120897g00001 452 SUPERFAMILY ARM repeat 154 437 IPR016024 -
Stsc120897g00001 452 Gene3D - 252 446 IPR011989 -
Stsc120897g00001 452 CDD RING-Ubox_PUB 67 119 IPR045210 -
Stsc120897g00001 452 Gene3D - 144 251 IPR011989 -
Stsc120897g00001 452 Pfam U-box domain 66 136 IPR003613 GO:0004842|GO:0016567
Stsc120897g00001 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 143 IPR013083 -
Stsc120897g00001 452 SMART Ubox_2 69 132 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120897g00001 Stsc-Chr120897 1399 4317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120897g00001 1 451 U-box Gene Family AT3G49810 74.058 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120897g00001 - - adu:107487639 811.216