Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120896g00019 ATGTCAAGCAGAAGATCTCGTTCCAGACAATCGGGTGTTTCCACTGAGATCACTGATGCTCAAATCACCGATCTTGTCTCCAAGCTACAACAACTCATCCCCGAGCTTCGCGCTAGGCGCTCCGACAAGGTGTCAGCATCTAAGGTATTGCAAGAGACTTGCAACTACATCAAGAACTTGCATAGAGAAGTTGATGATCTAAGTGACCGATTGTCAGAGCTTTTGGCCAACACAGACTCCAACAGTGCTCAAGCAGCCATTATTAGGAGCTTACTTATGTAA 282 0.461 MSSRRSRSRQSGVSTEITDAQITDLVSKLQQLIPELRARRSDKVSASKVLQETCNYIKNLHREVDDLSDRLSELLANTDSNSAQAAIIRSLLM 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120896g00019 93 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
Stsc120896g00019 93 Gene3D - 19 89 IPR036638 GO:0046983
Stsc120896g00019 93 CDD bHLH_AtPRE_like 17 77 - -
Stsc120896g00019 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983
Stsc120896g00019 93 FunFam Transcription factor ILI6 7 89 - -
Stsc120896g00019 93 Coils Coil 57 77 - -
Stsc120896g00019 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Stsc120896g00019 93 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120896g00019 Stsc-Chr120896 101719 103281 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120896g00019 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 70.213 2.79e-36 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc120896g00019 HLH 1.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120896g00019 - - gmx:100804830 167.548